View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4421_low_3 (Length: 440)
Name: NF4421_low_3
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 8200993 - 8201263
Alignment:
| Q |
18 |
gaaagagagtaaaaaagtgaagtgaagttatagaacaagtacactaaagtattgtagtagtgaagatcattgaaaatgggtcgtgggaagattgagataa |
117 |
Q |
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| T |
8200993 |
gaaagagagaaaaaaagtgaagtgaagttatagaacaagtacactaaagtattgtagtagtgaagatcattgaaaatgggtcgtgggaagattgagataa |
8201092 |
T |
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| Q |
118 |
agttgattgagaatcctactaacaggcaagtgacatactcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctatgtgatgctaa |
217 |
Q |
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| T |
8201093 |
agttgattgagaatcctactaacaggcaagtgacatactcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctttgtgatgctaa |
8201192 |
T |
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| Q |
218 |
ggtttcactcatcatgttctccaaaaataacaagatgcatgaatacatcacccctggtctatcgtaagtac |
288 |
Q |
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| T |
8201193 |
ggtttcactcatcatgttctccaaaaataacaagatgcatgaatacatcacccctggtctctcgtaagtac |
8201263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 8201330 - 8201406
Alignment:
| Q |
354 |
atattatgttacttgtgaaccagtacaaagaagattattgatcagtatcagaagactttaggggatatagatctgtg |
430 |
Q |
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| T |
8201330 |
atattatgttacttgtgaaccagtacaaagaagattattgatcagtatcagaagactttaggggatatagatctgtg |
8201406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 47271179 - 47271121
Alignment:
| Q |
155 |
ctcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctatgtgatg |
213 |
Q |
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| T |
47271179 |
ctcaaagagaaggaatggtttaatcaagaaagcttatgaactttctgttctatgcgatg |
47271121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 52800089 - 52800177
Alignment:
| Q |
135 |
actaacaggcaagtgacatactcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctatgtgatgctaaggtttc |
223 |
Q |
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| T |
52800089 |
actaaccgacaagtaacttactcaaaacgaaggaatggtcttttcaagaaggctaatgagctcactgttctttgtgatgctaaggtttc |
52800177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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