View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4421_low_4 (Length: 383)
Name: NF4421_low_4
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 156 - 363
Target Start/End: Complemental strand, 42055218 - 42055011
Alignment:
| Q |
156 |
tattaagacaatgtatgagcatttgaacatatattatatttatgaatcttattccatatagaaagacaataattataagaacaaaactaaagtttacaag |
255 |
Q |
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| T |
42055218 |
tattaagacaatgtatgagcatttgaacatatattatatttatgaatcttattccatatagaaagacaataattataagaacaaaactaaagtttacaag |
42055119 |
T |
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| Q |
256 |
aaaatggtaacctgcaatggcaagtttggattcatcatggtcatgggcaggtaatgtatcttggacgacccctgccattggagagacaggaatgtcctcg |
355 |
Q |
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| T |
42055118 |
aaaatggtaacctgcaatggcaagtttggattcatcatggtcatgggcaggtaatgtatcttggacgacccctgccattggagagacaggaatgtcctcg |
42055019 |
T |
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| Q |
356 |
aagaaact |
363 |
Q |
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|||||||| |
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| T |
42055018 |
aagaaact |
42055011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 42071276 - 42071243
Alignment:
| Q |
261 |
ggtaacctgcaatggcaagtttggattcatcatg |
294 |
Q |
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| T |
42071276 |
ggtaacctgcaatgggaagtttggattcatcatg |
42071243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 42079502 - 42079469
Alignment:
| Q |
261 |
ggtaacctgcaatggcaagtttggattcatcatg |
294 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
42079502 |
ggtaacctgcaatggcaagtttggattgatcatg |
42079469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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