View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4421_low_6 (Length: 355)
Name: NF4421_low_6
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 38407265 - 38406941
Alignment:
| Q |
19 |
gagacttcaatgaggccaattggagctcaaaatgcagaacaacaatttcaagcataggatgataacgcaaactgcactcgaacaatgcaaaatggcaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407265 |
gagacttcaatgaggccaattggagctcaaaatgcagaacaacaatttcaagcataggatgataacgcaaactgcactcgaacaatgcaaaatggcaaaa |
38407166 |
T |
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| Q |
119 |
ttctgtgttaccaagcctacacagcacaaactatatatactctctagccacaaaaactatcacaaaccgtgcaatacagctgcaacgaaatctcctgtnn |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38407165 |
ttctgtgttaccaagcctacacagcacaaactatatatactctctagccacaaaaactatcacaaaccgtgcaatacagttgcaacgaaatctcctgt-a |
38407067 |
T |
|
| Q |
219 |
nnnnnntctgcaataaagtttctacaagcaacacagtaggctattataacagcaaaaccaatgcatgaa--taccgtttagtagattcttaataaatttc |
316 |
Q |
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|||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38407066 |
taaaaatctgcaataaagtttctacaagcagcacagtaagctatgataacagcaaaaccaatgcatgaatgtaccgtttagtagattcttaataaatttc |
38406967 |
T |
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| Q |
317 |
atttatacggcctaccttttctcttc |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38406966 |
atttatacggcctaccttttctcttc |
38406941 |
T |
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