View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4421_low_7 (Length: 329)
Name: NF4421_low_7
Description: NF4421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4421_low_7 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 44478 - 44790
Alignment:
| Q |
1 |
tatgtcatatggttttataaatacaatgtataaattgaaattcaaaattataagttggtgcacttgtttacttgttttaagattcttcaagtaataatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
44478 |
tatgtcatatggttttataaatacaatgtataaattgcaattcaaaattatcagttggttcacttgtttacttgttttaagattctaaaagtaataatct |
44577 |
T |
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| Q |
101 |
tataatcctcttnnnnnnnggtaataataattagataaaacaaaactagtaataataagtagataa----taggtgtacttggtgctggtgcatatccgt |
196 |
Q |
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| T |
44578 |
tataatcctcttaaaaaaaggtaataataactagataaaacaaaactagtaataataagtagataaaaggtaggtgtatttggtgctagtgcatatccgt |
44677 |
T |
|
| Q |
197 |
aagaaggaaaaaaccgaggtgcagaagtaagatgcaagaattaaaactcaggaggttcatagaggaattatatatgatttgtaagagaaattcttaatac |
296 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44678 |
aagaaggaaaaaaccgaggtgcagaagtaaggtgcaagaattaaaactcaggaggttcatagaggaattatatatgatttgtaagagaaattcttaatac |
44777 |
T |
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| Q |
297 |
tcagggggttcat |
309 |
Q |
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||||||| ||||| |
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| T |
44778 |
tcaggggattcat |
44790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 53876 - 54157
Alignment:
| Q |
1 |
tatgtcatatggttttataaatacaatgtataaattgaaattcaaaattataagttggtgcacttgtttacttgttttaagattcttcaagtaataatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53876 |
tatgtcatatggttttataaatacaatgtataaattgcaattcaaaattataagttggttcacttgtttacttgttttaagattcttcaagtaataatct |
53975 |
T |
|
| Q |
101 |
tataatcctcttnnnnnnnggtaataataattagataaaacaaaactagtaataataagtagataa----taggtgtacttggtgctggtgcatatccgt |
196 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
53976 |
tataatcctcttaaaaaaaggtaataataactagataaaacaaaactagtaataataagtagataaaaggtaggtgtatttggtgctggtgcatatccgt |
54075 |
T |
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| Q |
197 |
aagaaggaaaaaaccgaggtgcagaagtaagatgcaagaattaaaactcaggaggttcatagaggaattatatatgatttgt |
278 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54076 |
aagaaggaaaaaaccgaggtgcagaagtaaggtgcaagaattaaaactcaggaggttcatagaggaattatatatgatttgt |
54157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 27951088 - 27951400
Alignment:
| Q |
1 |
tatgtcatatggttttataaatacaatgtataaattgaaattcaaaattataagttggtgcacttgtttacttgttttaagattcttcaagtaataatct |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||| |
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| T |
27951088 |
tatgtcatatggttttataaatacaatgtataaattgcaattcaaaattatcagttggttcacttgtttacttgttttaggattctcgaagtaataatct |
27951187 |
T |
|
| Q |
101 |
tataatcctcttnnnnnnnggtaataataattagataaaacaaaactagtaataataagtagataa----taggtgtacttggtgctggtgcatatccgt |
196 |
Q |
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|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |
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| T |
27951188 |
tataatcctcttaaaaaaaggtaataataactggataaaacaaaactagtaataataagtagataaaaggtaggtgtatttggtgctagtgcatatccgt |
27951287 |
T |
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| Q |
197 |
aagaaggaaaaaaccgaggtgcagaagtaagatgcaagaattaaaactcaggaggttcatagaggaattatatatgatttgtaagagaaattcttaatac |
296 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27951288 |
aagaaggaaaaaaccgaggtgcagaagtaaggtgcaagaattaaaactcaggaggttcatagaggaattatatatgatttgtaagagaaattcttaatac |
27951387 |
T |
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| Q |
297 |
tcagggggttcat |
309 |
Q |
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||||||||||||| |
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| T |
27951388 |
tcagggggttcat |
27951400 |
T |
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