View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4422-Insertion-1 (Length: 718)

Name: NF4422-Insertion-1
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4422-Insertion-1
NF4422-Insertion-1
[»] chr1 (19 HSPs)
chr1 (7-718)||(48153099-48153819)
chr1 (648-718)||(2820996-2821066)
chr1 (648-718)||(12800410-12800480)
chr1 (648-718)||(38328826-38328896)
chr1 (648-718)||(48594165-48594235)
chr1 (648-718)||(48598776-48598846)
chr1 (617-718)||(28371643-28371744)
chr1 (651-718)||(50164649-50164716)
chr1 (648-718)||(2821429-2821499)
chr1 (648-718)||(12800027-12800097)
chr1 (617-718)||(50164244-50164345)
chr1 (614-718)||(33631030-33631134)
chr1 (648-718)||(38469225-38469295)
chr1 (648-718)||(43755887-43755957)
chr1 (648-718)||(43756287-43756357)
chr1 (653-718)||(28371242-28371307)
chr1 (648-718)||(38328425-38328495)
chr1 (648-718)||(38468944-38469014)
chr1 (648-718)||(48589078-48589148)
[»] chr3 (27 HSPs)
chr3 (617-718)||(32473768-32473869)
chr3 (617-718)||(930373-930474)
chr3 (648-718)||(11441687-11441757)
chr3 (617-718)||(11442095-11442196)
chr3 (648-718)||(21166096-21166166)
chr3 (652-718)||(26006718-26006784)
chr3 (648-718)||(929949-930019)
chr3 (648-718)||(5113236-5113306)
chr3 (648-718)||(20586524-20586594)
chr3 (648-718)||(24394674-24394744)
chr3 (648-718)||(36992113-36992183)
chr3 (648-718)||(37017553-37017623)
chr3 (648-718)||(38000232-38000302)
chr3 (648-718)||(45000767-45000837)
chr3 (617-718)||(32474402-32474503)
chr3 (651-718)||(24394288-24394355)
chr3 (647-718)||(45000352-45000423)
chr3 (648-718)||(5113648-5113718)
chr3 (648-718)||(20586110-20586180)
chr3 (648-718)||(26006184-26006254)
chr3 (648-718)||(42257252-42257322)
chr3 (653-716)||(14788317-14788380)
chr3 (651-718)||(50766670-50766736)
chr3 (648-718)||(14788540-14788610)
chr3 (617-718)||(43521084-43521182)
chr3 (651-718)||(42258002-42258068)
chr3 (648-718)||(43104717-43104787)
[»] chr2 (15 HSPs)
chr2 (648-718)||(3705764-3705834)
chr2 (648-718)||(3705375-3705445)
chr2 (648-718)||(16681604-16681674)
chr2 (648-718)||(7994093-7994163)
chr2 (648-718)||(30899428-30899498)
chr2 (648-718)||(6609983-6610053)
chr2 (648-718)||(7994513-7994583)
chr2 (648-718)||(15561980-15562050)
chr2 (648-718)||(16903837-16903907)
chr2 (648-718)||(16992331-16992401)
chr2 (651-718)||(15561582-15561649)
chr2 (648-706)||(37996535-37996593)
chr2 (648-718)||(16903436-16903505)
chr2 (653-718)||(30899841-30899906)
chr2 (648-718)||(6609589-6609659)
[»] chr6 (12 HSPs)
chr6 (617-718)||(28983232-28983333)
chr6 (617-718)||(34717695-34717796)
chr6 (648-718)||(28982819-28982889)
chr6 (617-718)||(19062763-19062864)
chr6 (617-718)||(34717249-34717350)
chr6 (648-718)||(7635575-7635645)
chr6 (648-718)||(7635162-7635232)
chr6 (648-718)||(18290435-18290505)
chr6 (651-713)||(28535408-28535470)
chr6 (652-718)||(4348889-4348955)
chr6 (648-718)||(18290253-18290323)
chr6 (654-706)||(12999429-12999481)
[»] chr7 (14 HSPs)
chr7 (648-718)||(20560221-20560291)
chr7 (648-718)||(20559784-20559854)
chr7 (648-718)||(33140234-33140304)
chr7 (617-718)||(33139781-33139882)
chr7 (648-716)||(42900685-42900753)
chr7 (647-718)||(40641110-40641181)
chr7 (648-718)||(4179675-4179745)
chr7 (648-718)||(4180278-4180348)
chr7 (648-718)||(30414219-30414289)
chr7 (648-718)||(42901076-42901146)
chr7 (650-718)||(40640690-40640758)
chr7 (648-718)||(25137450-25137520)
chr7 (648-718)||(25137864-25137935)
chr7 (647-718)||(35211939-35212010)
[»] scaffold0022 (2 HSPs)
scaffold0022 (648-718)||(61612-61682)
scaffold0022 (656-718)||(62027-62089)
[»] chr8 (9 HSPs)
chr8 (648-718)||(14197697-14197767)
chr8 (648-718)||(37657885-37657955)
chr8 (653-718)||(41714646-41714711)
chr8 (653-718)||(39439801-39439866)
chr8 (653-718)||(39440539-39440604)
chr8 (653-718)||(41715207-41715272)
chr8 (651-718)||(30846057-30846124)
chr8 (648-718)||(30846436-30846506)
chr8 (653-718)||(37658484-37658549)
[»] chr5 (14 HSPs)
chr5 (648-718)||(5620809-5620879)
chr5 (648-718)||(3595815-3595885)
chr5 (648-718)||(3596233-3596303)
chr5 (648-718)||(8321327-8321397)
chr5 (648-718)||(12330602-12330672)
chr5 (648-718)||(16996969-16997039)
chr5 (648-718)||(24027626-24027696)
chr5 (647-718)||(29759634-29759705)
chr5 (648-718)||(7858365-7858435)
chr5 (648-718)||(12330186-12330256)
chr5 (617-718)||(42655680-42655781)
chr5 (648-718)||(7858759-7858829)
chr5 (648-718)||(8320913-8320983)
chr5 (648-718)||(24027225-24027295)
[»] chr4 (12 HSPs)
chr4 (648-718)||(20175008-20175078)
chr4 (649-718)||(19860812-19860881)
chr4 (648-718)||(5235412-5235482)
chr4 (648-718)||(5259268-5259338)
chr4 (648-718)||(6934442-6934512)
chr4 (648-718)||(19860368-19860438)
chr4 (651-718)||(5235826-5235893)
chr4 (651-718)||(52532370-52532437)
chr4 (648-718)||(6933859-6933929)
chr4 (648-718)||(52532161-52532231)
chr4 (653-718)||(30213855-30213920)
chr4 (669-718)||(20175365-20175414)
[»] scaffold0508 (2 HSPs)
scaffold0508 (648-718)||(4171-4241)
scaffold0508 (648-718)||(4564-4634)
[»] scaffold0095 (1 HSPs)
scaffold0095 (653-718)||(42872-42937)
[»] scaffold0006 (1 HSPs)
scaffold0006 (648-718)||(202223-202293)


Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Complemental strand, 48153819 - 48153099
Alignment:
Q  7 aatttggactgatgtccctaattcttgttgtggaaatactcctgcttatgtcaaattattctgtacattatgtctgaagtttctctttattatgaagtgg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48153819 aatttggactgatgtccctaattcttgttgtggaaatactcctgcttatgtcaaattattctgtacattatgtctgaagtttctctttgttatgaagtgg 48153720  T
Q  107 atatcgaactgctccaatgcatgtggcagaagctgatcaagctcaccttgctggccgaaggggccgtgg---------gcatgggcgtggtcatgttctt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  48153719 atatcgaactgctccaatgcatgtggcagaagctgatcaagctcaccttgctggccgaaggggccgtggtggccgtgggcatgggcgtggtcatgttctt 48153620  T
Q  198 atgcctgtggttgagggaccatatccgcaacatccagaagccgatcaagctcaccttgctggtggaaggggccgtggtgggcgtggtcgtgttcgtaggc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48153619 atgcctgtggttgagggaccatatccgcaacatccagaagccgatcaagctcaccttgctggtggaaggggccgtggtgggcgtggtcgtgttcgtaggc 48153520  T
Q  298 gctatgatacacctctaccaccaattgaacccgtctttgattttattaggactcaagtagcctttcttgagactatggttgacaacaaggtagaaactaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48153519 gctatgatacacctctaccaccaattgaacccgtctttgattttattaggactcaagtagcctctcttgagactatggttgacaacaaggtagaaactaa 48153420  T
Q  398 ggtgaaagctgttgtggatactaggttcgatgccctagagcatctcatccgtaatgttacccgcaattaaagatgttaagatgtttcttaacaatttaaa 497  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48153419 ggtgaaagctgttgtggatcctaggttcgatgccctagagcatctcatccgtaatgttacccgcaattaaagatgttaagatgtttcttaacaatttaaa 48153320  T
Q  498 ttttgcttttgaatgatcttttctgtacttgttgaaacaagtttttggttgtgtaatatctcacggtacgagacatttttcttgtggttgaactaaaata 597  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48153319 ttttgcttttgaacgatcttttctgtacttgttgaaataagtttttggttgtgtaatatctcacggtacgagacatttttcttgtggttgaactaaaata 48153220  T
Q  598 gtttcttttcctggtaagatttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatcctta 697  Q
    ||||||||||||| | || |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48153219 gtttcttttcctgatgaggtttagcatgggaaagctacttttttcccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatcctta 48153120  T
Q  698 ttatactccttcatcactaga 718  Q
    | |||||||||||||||||||    
T  48153119 tcatactccttcatcactaga 48153099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 2820996 - 2821066
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  2820996 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 2821066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 12800480 - 12800410
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  12800480 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 12800410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 38328896 - 38328826
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  38328896 atgggaaagttagtttttaatcattagatcaaaccaagaacacatccttatcatactccctcatcactaga 38328826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 48594235 - 48594165
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  48594235 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 48594165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 48598846 - 48598776
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  48598846 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 48598776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 28371744 - 28371643
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  28371744 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctcatcacta 28371645  T
Q  717 ga 718  Q
    ||    
T  28371644 ga 28371643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 718
Target Start/End: Complemental strand, 50164716 - 50164649
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  50164716 ggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactccttcatcactaga 50164649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 2821499 - 2821429
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  2821499 atgggaaagttaatttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 2821429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 12800027 - 12800097
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| | |||||||||||    
T  12800027 atgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatacttcctcatcactaga 12800097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 617 - 718
Target Start/End: Original strand, 50164244 - 50164345
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||| ||||       ||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||| |||| ||||    
T  50164244 tttagcatgggaaaactacttttttcccactatgggaaagttagtttatgaccattagatcaaaccaagaatacatccttatcatactccctcattacta 50164343  T
Q  717 ga 718  Q
    ||    
T  50164344 ga 50164345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 614 - 718
Target Start/End: Complemental strand, 33631134 - 33631030
Alignment:
Q  614 agatttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatca 713  Q
    ||||||||||||||||| ||||       |||  |||||||| ||||||||||| ||||||||||||| |||||||||||||||  ||||||| ||||||    
T  33631134 agatttagcatgggaaaactacttttttcccaccatgggaaaattagtttttgaccattagatcaaacgaagaacacatccttaccatactccctcatca 33631035  T
Q  714 ctaga 718  Q
    |||||    
T  33631034 ctaga 33631030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 38469295 - 38469225
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||||||  ||||||| |||||||||||    
T  38469295 atgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccatcatcactaga 38469225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 43755887 - 43755957
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||| ||||    
T  43755887 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcattaga 43755957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 43756357 - 43756287
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||||  ||||||| |||||||||||    
T  43756357 atgggaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccctcatcactaga 43756287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 653 - 718
Target Start/End: Original strand, 28371242 - 28371307
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||  |||||||||||    
T  28371242 aaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactctctcatcactaga 28371307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 38328425 - 38328495
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||| | ||||||||||||||||||||| |||||||  ||||||| |||||||||||    
T  38328425 atggaaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcactaga 38328495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 38468944 - 38469014
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||| || ||| ||||||||||||||||  ||||||| |||||||||||    
T  38468944 atgggaaagttagtttttaaccattatattaaatcaagaacacatccttaccatactccctcatcactaga 38469014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 48589148 - 48589078
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||| |||||||| ||  ||||||||||| ||||||||||||||||| ||||| | | |||||||||    
T  48589148 atgggaaaattagttttcgacgattagatcaaatcaagaacacatccttatcatacttcataatcactaga 48589078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 617 - 718
Target Start/End: Original strand, 32473768 - 32473869
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  32473768 tttagcatgggaaagctacttttttcccactatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttattatactccctcatcacta 32473867  T
Q  717 ga 718  Q
    ||    
T  32473868 ga 32473869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 930474 - 930373
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  930474 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcacta 930375  T
Q  717 ga 718  Q
    ||    
T  930374 ga 930373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 11441687 - 11441757
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  11441687 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 11441757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 11442196 - 11442095
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  11442196 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacaaagaacacatccttatcatactccctcatcacta 11442097  T
Q  717 ga 718  Q
    ||    
T  11442096 ga 11442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 21166166 - 21166096
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  21166166 atgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 21166096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 652 - 718
Target Start/End: Complemental strand, 26006784 - 26006718
Alignment:
Q  652 gaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  26006784 gaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 26006718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 929949 - 930019
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||  ||||||||||    
T  929949 atgggaaagttagtttttgaccattagatcaaaccaataacacatccttatcatactcccccatcactaga 930019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 5113236 - 5113306
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  5113236 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 5113306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 20586594 - 20586524
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  20586594 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 20586524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 24394744 - 24394674
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  24394744 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 24394674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 36992183 - 36992113
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  36992183 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 36992113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 37017623 - 37017553
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  37017623 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 37017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 38000302 - 38000232
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  38000302 atggaaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatacttcctcatcactaga 38000232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 45000837 - 45000767
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  45000837 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 45000767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 32474503 - 32474402
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||||||||||||||||||| ||||||||||||| |||||| ||||||||  ||||||| |||||||||    
T  32474503 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacgaagaacgcatccttaccatactccctcatcacta 32474404  T
Q  717 ga 718  Q
    ||    
T  32474403 ga 32474402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 718
Target Start/End: Original strand, 24394288 - 24394355
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  24394288 ggaaagttagtttttaaccattagatcaaaccaagaacacatccttagcatactccctcatcactaga 24394355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 647 - 718
Target Start/End: Original strand, 45000352 - 45000423
Alignment:
Q  647 tatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||||||||  ||||||| |||||||||||    
T  45000352 tatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccctcatcactaga 45000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 5113718 - 5113648
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||||||||||||||||| |||||||||  ||||||| |||||||||||    
T  5113718 atgggaaagttagtttttaaccattagatcaaaccaagaatacatccttaccatactccctcatcactaga 5113648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 20586110 - 20586180
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||||||  ||||||| |||||||||||    
T  20586110 atgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccctcatcactaga 20586180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 26006184 - 26006254
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||||||||||| || ||||||||||||  |||||||||||||||||||    
T  26006184 atgggaaagttagtttttaaccattagatcaaactaataacacatccttaccatactccttcatcactaga 26006254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 42257252 - 42257322
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||| |||||||||||    
T  42257252 atggaaaagttagtttttgaccattaaatcaaaccaagaacacatctttatcatactccctcatcactaga 42257322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 653 - 716
Target Start/End: Original strand, 14788317 - 14788380
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||| |||||||||    
T  14788317 aaagttagtttttgaccattagaacaaaccaagaacacatctttatcatactccctcatcacta 14788380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 718
Target Start/End: Original strand, 50766670 - 50766736
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  50766670 ggaaagttaatttttgaccattagatcaaaccaagaacacattcttatcatactcc-tcatcactaga 50766736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 14788610 - 14788540
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||| | ||||| |||||    
T  14788610 atgggaaagttagtttttgaccattagatcaaaccaagaagacattcttatcatacttcctcatcgctaga 14788540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 617 - 718
Target Start/End: Original strand, 43521084 - 43521182
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||||||||||||||||||| ||||||||||||||    |||||||||||| ||||||| |||||||||    
T  43521084 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacc---tacacatccttatcatactccctcatcacta 43521180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 718
Target Start/End: Complemental strand, 42258068 - 42258002
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||| |||||||||||| ||| ||||||| ||||| ||||||| |||||||||||    
T  42258068 ggaaagttagtttttgaccattagatcaaatcaataacacat-cttatcatactccctcatcactaga 42258002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 43104787 - 43104717
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||| |||  ||||||| |||||| ||||    
T  43104787 atgggaaagttagtttttaaccattagatcaaacgaagaacacatctttaccatactccctcatcattaga 43104717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 3705834 - 3705764
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3705834 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccttcatcactaga 3705764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 3705375 - 3705445
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  3705375 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccatatcatactccctcatcactaga 3705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 16681604 - 16681674
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  16681604 atgggaaagttagtttttggccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 16681674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 7994093 - 7994163
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  7994093 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 7994163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 30899428 - 30899498
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  30899428 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 30899498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 6610053 - 6609983
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  6610053 atgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccctcatcactaga 6609983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 7994583 - 7994513
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| ||||| |||||    
T  7994583 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcgctaga 7994513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 15562050 - 15561980
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  15562050 atgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccctcatcactaga 15561980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 16903907 - 16903837
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  16903907 atgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcactaga 16903837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 16992401 - 16992331
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  16992401 atgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcactaga 16992331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 718
Target Start/End: Original strand, 15561582 - 15561649
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  15561582 ggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcactaga 15561649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 706
Target Start/End: Complemental strand, 37996593 - 37996535
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactcc 706  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||    
T  37996593 atgggaaagttagtttttaaccattagatcaaatcaagaacacatccttatcatactcc 37996535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 16903436 - 16903505
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||| | ||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  16903436 atggaaaagttagtttttaaccattagatcaaac-aagaacacatccttaccatactccctcatcactaga 16903505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 653 - 718
Target Start/End: Complemental strand, 30899906 - 30899841
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||  ||||||| |||||| ||||    
T  30899906 aaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccctcatcattaga 30899841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 6609589 - 6609659
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||| | |||||||| ||||||| ||||||||||||  ||||||| || ||||||||    
T  6609589 atggaaaagttagtttttaaccattagatgaaaccaacaacacatccttaccatactccctcttcactaga 6609659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 28983333 - 28983232
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  28983333 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcacta 28983234  T
Q  717 ga 718  Q
    ||    
T  28983233 ga 28983232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 34717796 - 34717695
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34717796 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcacta 34717697  T
Q  717 ga 718  Q
    ||    
T  34717696 ga 34717695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 28982819 - 28982889
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||    
T  28982819 atgggaaagttagtttttgaccattcgatcaaaccaagaacacatccttatcatactccctcatcactaga 28982889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 19062864 - 19062763
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  ||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  19062864 tttagcatgggaaagctacttttttcccaccatgagaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctcatcacta 19062765  T
Q  717 ga 718  Q
    ||    
T  19062764 ga 19062763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 617 - 718
Target Start/End: Original strand, 34717249 - 34717350
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||  |||||||||    
T  34717249 tttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgatcattagatcaaatcaagaacacgtccttatcatactctctcatcacta 34717348  T
Q  717 ga 718  Q
    ||    
T  34717349 ga 34717350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 7635645 - 7635575
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  7635645 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 7635575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 7635162 - 7635232
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  7635162 atgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccctcatcactaga 7635232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 18290505 - 18290435
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||  ||||||| |||||||||||    
T  18290505 atgggaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcactaga 18290435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 713
Target Start/End: Complemental strand, 28535470 - 28535408
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatca 713  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||    
T  28535470 ggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatacttcctcatca 28535408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 652 - 718
Target Start/End: Original strand, 4348889 - 4348955
Alignment:
Q  652 gaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  4348889 gaaagtttgtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 4348955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 18290253 - 18290323
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||| ||||| | ||||||||||||||||||||| |||||||  ||||||| |||||||||||    
T  18290253 atgggaaagttaatttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcactaga 18290323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 706
Target Start/End: Complemental strand, 12999481 - 12999429
Alignment:
Q  654 aagttagtttttgatcattagatcaaaccaagaacacatccttattatactcc 706  Q
    |||||||||||| | ||||||||||||||||||||| |||||||  |||||||    
T  12999481 aagttagtttttaaccattagatcaaaccaagaacatatccttaccatactcc 12999429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 20560291 - 20560221
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  20560291 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 20560221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 20559784 - 20559854
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  20559784 atgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactccctcatcactaga 20559854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 33140304 - 33140234
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  33140304 atgggaaagttagtttttgaccattagatcaaactaagaacacatccttatcatactccctcatcactaga 33140234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 617 - 718
Target Start/End: Original strand, 33139781 - 33139882
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  ||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  33139781 tttagcatgggaaagctactttttttccaccatgagaaagttggtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcacta 33139880  T
Q  717 ga 718  Q
    ||    
T  33139881 ga 33139882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 648 - 716
Target Start/End: Original strand, 42900685 - 42900753
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  42900685 atgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactcgttcatcacta 42900753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 647 - 718
Target Start/End: Complemental strand, 40641181 - 40641110
Alignment:
Q  647 tatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| | |||||||||    
T  40641181 tatgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactcccttatcactaga 40641110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 4179675 - 4179745
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  4179675 atgggaaagttagtatttgaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 4179745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 4180348 - 4180278
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  4180348 atgggaaagttagtttttgaccattagatcaaactaagaacacatccttaccatactccctcatcactaga 4180278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 30414219 - 30414289
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  30414219 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 30414289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 42901146 - 42901076
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||| |||||||||||    
T  42901146 atgggaaagttagtttttgaccattagatcaaaccaagaacacattgttatcatactccctcatcactaga 42901076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 718
Target Start/End: Original strand, 40640690 - 40640758
Alignment:
Q  650 gggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| |||| || |||| |||||||||||    
T  40640690 gggaaagttagtttttaatcattaaatcaaaccaagaacacatcattatcattctccctcatcactaga 40640758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 25137450 - 25137520
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||| ||| ||||||||||||  ||||||| |||||||||||    
T  25137450 atgggaaagttagtttttaaccattagatcaaatcaataacacatccttaccatactccctcatcactaga 25137520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 25137935 - 25137864
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaa-gaacacatccttattatactccttcatcactaga 718  Q
    |||||||| ||||||||| | |||||||||||| ||| |||||||||||||  ||||||| |||||||||||    
T  25137935 atgggaaaattagtttttaaccattagatcaaatcaaagaacacatccttaccatactccctcatcactaga 25137864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 647 - 718
Target Start/End: Original strand, 35211939 - 35212010
Alignment:
Q  647 tatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||| ||||||||||||||| ||||| |||||| ||||||||||| ||||| ||||| | |||||| ||||    
T  35211939 tatggaaaagttagtttttgaccattaaatcaaatcaagaacacattcttatcatacttcatcatcattaga 35212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 61612 - 61682
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  61612 atgggaaagttagtttttgaccattagatcaaaccaagaacacatccttctcatactccctcatcactaga 61682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 656 - 718
Target Start/End: Complemental strand, 62089 - 62027
Alignment:
Q  656 gttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||| | |||||||||||||||||| ||||||||||  ||||||| |||||||||||    
T  62089 gttagttttttagcattagatcaaaccaagatcacatccttaccatactccctcatcactaga 62027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 14197697 - 14197767
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  14197697 atgggaaagttagtttttgaccattagatcaaagcaagaacacatccttatcatactccctcatcactaga 14197767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 37657885 - 37657955
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  37657885 atgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactccctcatcactaga 37657955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 653 - 718
Target Start/End: Original strand, 41714646 - 41714711
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  41714646 aaagttagtttttgatcattagatcaaaccaagaacacatccttatcataatccctcatcactaga 41714711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 718
Target Start/End: Original strand, 39439801 - 39439866
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  39439801 aaagttagtttttgactattagatcaaaccaagaacacatccttatcatactccctcatcactaga 39439866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 718
Target Start/End: Complemental strand, 39440604 - 39440539
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  39440604 aaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcatcactaga 39440539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 718
Target Start/End: Complemental strand, 41715272 - 41715207
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  41715272 aaagttagtttttgaccattagatcaaaccaagaacatatccttatcatactccatcatcactaga 41715207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 718
Target Start/End: Original strand, 30846057 - 30846124
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  30846057 ggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 30846124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 30846506 - 30846436
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||| ||||||||| | ||||||||||||||||||||| |||||||  ||||||| |||||||||||    
T  30846506 atgggaaaattagtttttaaccattagatcaaaccaagaacatatccttaccatactccctcatcactaga 30846436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 653 - 718
Target Start/End: Complemental strand, 37658549 - 37658484
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||| | ||||||||||||| |||||||| ||||||  |||||||||||| ||||||    
T  37658549 aaagttagttttttaccattagatcaaacgaagaacacgtccttaccatactccttcattactaga 37658484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 5620879 - 5620809
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  5620879 atgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 5620809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 3595815 - 3595885
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  3595815 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 3595885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 3596303 - 3596233
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  3596303 atgggaaaattagtttttaaccattagatcaaaccaagaacacatccttactatactccctcatcactaga 3596233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 8321397 - 8321327
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  8321397 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 8321327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 12330672 - 12330602
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  12330672 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 12330602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 16997039 - 16996969
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  16997039 atgggaaagttagtttttgaccattagatcaaacgaagaacacatccttaccatactccctcatcactaga 16996969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 24027696 - 24027626
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  24027696 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 24027626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 647 - 718
Target Start/End: Original strand, 29759634 - 29759705
Alignment:
Q  647 tatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||  ||||||||||    
T  29759634 tatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcccccatcactaga 29759705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 7858365 - 7858435
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||| ||||    
T  7858365 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcattaga 7858435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 12330186 - 12330256
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  12330186 atgggaaagttaatttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 12330256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 617 - 718
Target Start/End: Complemental strand, 42655781 - 42655680
Alignment:
Q  617 tttagcatgggaaagctacnnnnnnnccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcacta 716  Q
    |||||||||||||||||||       |||  |||| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| | |||||||||    
T  42655781 tttagcatgggaaagctacttctttcccaccatggaaaaattagtttttgaccattagatcaaaccaataacacatccttatcatacttcctcatcacta 42655682  T
Q  717 ga 718  Q
    ||    
T  42655681 ga 42655680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 7858829 - 7858759
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | ||||| ||||||||||||| |||||||||  ||||||| |||||||||||    
T  7858829 atgggaaagttagtttttaaccattaaatcaaaccaagaatacatccttaccatactccctcatcactaga 7858759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 8320913 - 8320983
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||| ||||||| ||||||||||||  ||||||| |||||||||||    
T  8320913 atgggaaagttagtttttaaccattagattaaaccaataacacatccttaccatactccctcatcactaga 8320983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 24027225 - 24027295
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||| |  ||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  24027225 atggaaaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccctcatcactaga 24027295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 20175008 - 20175078
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  20175008 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactccctcatcactaga 20175078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 649 - 718
Target Start/End: Complemental strand, 19860881 - 19860812
Alignment:
Q  649 tgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  19860881 tgggaaagttagtttttgaccattagatcaaaccaagaacacatccttttcatactccctcatcactaga 19860812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 5235412 - 5235482
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  5235412 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactcactcatcactaga 5235482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 5259338 - 5259268
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||| || |||||||||||| |||||||||||| |||| |||||||||||||||||||    
T  5259338 atgggaaagttagttttcgaccattagatcaaatcaagaacacatctttatcatactccttcatcactaga 5259268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 6934512 - 6934442
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  6934512 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 6934442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 19860368 - 19860438
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||| |||||||||||    
T  19860368 atgggaaagttagtttttgaccattagatcaaaccaagaacacatacttaccatactccctcatcactaga 19860438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 718
Target Start/End: Complemental strand, 5235893 - 5235826
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  5235893 ggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 5235826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 718
Target Start/End: Complemental strand, 52532437 - 52532370
Alignment:
Q  651 ggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  52532437 ggaaagttagtttttgaccagtagatcaaaccaagaacacatccttgttatactccctcatcattaga 52532370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 6933859 - 6933929
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  6933859 atggaaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 6933929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 52532161 - 52532231
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||| |||||||| ||  |||||||||||||||| |||| |||||||||||| |||||||||||    
T  52532161 atgggaaagtttgtttttgaccagcagatcaaaccaagaacgcatctttattatactccctcatcactaga 52532231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 653 - 718
Target Start/End: Complemental strand, 30213920 - 30213855
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| ||||||||||||||||||| | ||  |||| ||||||| |||||||||||    
T  30213920 aaagttagtttttgaccattagatcaaaccaagaatatatttttatcatactccctcatcactaga 30213855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 718
Target Start/End: Complemental strand, 20175414 - 20175365
Alignment:
Q  669 cattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||| ||||||||||||  || |||| |||||||||||    
T  20175414 cattagatcaaaccaataacacatccttaccatgctccctcatcactaga 20175365  T

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Target: scaffold0508 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 4171 - 4241
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  4171 atgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactaga 4241  T

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Target: scaffold0508; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 4634 - 4564
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  4634 atgggaaagttagtttttaacaattagatcaaaccaagaacacatccttaccatactccctcatcactaga 4564  T

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Target: scaffold0095 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 718
Target Start/End: Complemental strand, 42937 - 42872
Alignment:
Q  653 aaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  42937 aaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcatcactaga 42872  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 648 - 718
Target Start/End: Complemental strand, 202293 - 202223
Alignment:
Q  648 atgggaaagttagtttttgatcattagatcaaaccaagaacacatccttattatactccttcatcactaga 718  Q
    |||| ||||||||||||| | ||||| |||||||||||||||||||||||  ||||||| |||||||||||    
T  202293 atggaaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccctcatcactaga 202223  T

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