View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4422-Insertion-2 (Length: 594)
Name: NF4422-Insertion-2
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 39669594 - 39669313
Alignment:
| Q |
10 |
atgagattaacagaatgacgacaagtcatattgatt--ggtgtaagctacattttatagcttaacaaatttaatcaagtggatcgctgttattaagtgaa |
107 |
Q |
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| T |
39669594 |
atgagattaacagaatgacgacaagtcatattgattttggtgtaagctacattttatagcttaacaaatttaatcaagtggatcgctgttattaagtgaa |
39669495 |
T |
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| Q |
108 |
ttctcattttatataaacaaagtttgtatagagagctcacccgaagtaaaattatatatggatgcagacatcactagctcactcatgattattaatgtta |
207 |
Q |
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| T |
39669494 |
ttctcattttatataaacaaagtttgtatagagagctcacccgaagtaaaattatatatggatgcagacatcactagctcactcatgatttttaatgtta |
39669395 |
T |
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| Q |
208 |
ctaaagggatctggtatacatcattctaaacagacaccacaattttcaactcaacaatgtcaccagggcttgttcgatatca |
289 |
Q |
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| T |
39669394 |
ctaaagggatctggtatacatcattctaaacagacaccacaattttcaactcaacaatgtcaccagggcttgttcgatatca |
39669313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 39669324 - 39669243
Alignment:
| Q |
322 |
tgttcgatatcacgttccatatcaacgttgggtttatggatatcacgttgggctggcatgttcgatatcattagggcatgtt |
403 |
Q |
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| T |
39669324 |
tgttcgatatcacgttcgatatcaacgttgggtttatggatatcacgttgggctggcatgttcgatatcattacgggatgtt |
39669243 |
T |
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