View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4422-Insertion-3 (Length: 392)

Name: NF4422-Insertion-3
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4422-Insertion-3
NF4422-Insertion-3
[»] chr8 (2 HSPs)
chr8 (8-392)||(26797747-26798138)
chr8 (217-255)||(14955263-14955301)
[»] chr1 (3 HSPs)
chr1 (222-289)||(49899080-49899147)
chr1 (222-289)||(7845152-7845219)
chr1 (222-269)||(10483284-10483331)
[»] chr6 (1 HSPs)
chr6 (222-255)||(31535696-31535729)
[»] chr4 (3 HSPs)
chr4 (217-282)||(38868845-38868910)
chr4 (234-289)||(36363568-36363623)
chr4 (225-289)||(33095268-33095332)
[»] chr7 (1 HSPs)
chr7 (222-289)||(28299689-28299756)
[»] chr2 (2 HSPs)
chr2 (222-285)||(752199-752262)
chr2 (222-272)||(41311710-41311760)
[»] chr3 (1 HSPs)
chr3 (217-253)||(42983905-42983941)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 26798138 - 26797747
Alignment:
Q  8 tatacaagtattttcgccaatggtgtaaaggacaatgatgatattttaggggttttttctttgatcttttacaccatcactcttgtaactcttgttaagt 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26798138 tatacaagtattttcgccaatggtgtaaaggacaacgatgatattttaggggttttttctttgatcttttacaccatcactcttgtaactcttgttaagt 26798039  T
Q  108 atgtattcatcgtcttgcgtgccactgataatggggacggtaagcatgcatgca--------aactacgtatattta----atttttaggttttgctaac 195  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||    |||||||||| ||||||||    
T  26798038 atgtattcatcgtcttgcgtgctactgataatggggacggtaagcatgcatgcatgcgtgcaaactacgtatatttatttcatttttaggtcttgctaac 26797939  T
Q  196 gaatgctctgaggatagatagaaagctactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagactttttagggcac 295  Q
     |||||||||||||||||    ||  ||||||||||||||| |||||||||||||||||||||| ||||||||||||   |||||||| ||||| |||||    
T  26797938 aaatgctctgaggataga----aaattactttttaaacttttaatgtgttaaatgcatcagttccaaaacaaaattttctctttagacattttacggcac 26797843  T
Q  296 ttgttagcatttccttcattttttcaatttaatcttctggttttgcaacatatataataaagaactactactatttttaggagggacttttgcttta 392  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26797842 ttgttaacatttcctt-attttttcaatttaatcttctggttttgcaacatatataataaagaactactactatttttaggagggacttttgcttta 26797747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 14955263 - 14955301
Alignment:
Q  217 aaagctactttttaaactttcaatgtgttaaatgcatca 255  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  14955263 aaagttactttttaaactttcaatgtgttgaatgcatca 14955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 49899080 - 49899147
Alignment:
Q  222 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 289  Q
    ||||||| ||| |||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  49899080 tacttttcaaaatttcaatgtgttgaatgcatcatttccaaaacaaagtttctgctttagacttttta 49899147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 7845219 - 7845152
Alignment:
Q  222 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 289  Q
    ||||||||||||||| ||| |||||||||||||  | | |||||||||||||| ||||||||||||||    
T  7845219 tactttttaaacttttaatatgttaaatgcatccttactaaaacaaaatttcttctttagacttttta 7845152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 10483331 - 10483284
Alignment:
Q  222 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaa 269  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||    
T  10483331 tacttttaaaactttcaatgtattaaatgcatcatttctaaaacaaaa 10483284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 31535729 - 31535696
Alignment:
Q  222 tactttttaaactttcaatgtgttaaatgcatca 255  Q
    ||||||||||||||||||||||||||||||||||    
T  31535729 tactttttaaactttcaatgtgttaaatgcatca 31535696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 38868910 - 38868845
Alignment:
Q  217 aaagctactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttaga 282  Q
    |||| |||||||||||||||||||||||| ||||||||| | | || ||||||||||  |||||||    
T  38868910 aaagttactttttaaactttcaatgtgttgaatgcatcattcccaagacaaaatttcctctttaga 38868845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 36363623 - 36363568
Alignment:
Q  234 tttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 289  Q
    |||||||||||| ||||||||| | | |||||||||||||| ||||| ||||||||    
T  36363623 tttcaatgtgttgaatgcatcaatcccaaaacaaaatttcttctttaaacttttta 36363568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 33095268 - 33095332
Alignment:
Q  225 tttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 289  Q
    ||||||||| |||||| |||||||||||||| ||| |  ||||||||||| | ||| ||||||||    
T  33095268 tttttaaacattcaatatgttaaatgcatcatttctatgacaaaatttcttccttaaacttttta 33095332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 28299756 - 28299689
Alignment:
Q  222 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 289  Q
    ||||||||||| |||||||   |||||||||||| ||| |||||||||||| | ||||| ||||||||    
T  28299756 tactttttaaaatttcaatacattaaatgcatcatttctaaaacaaaatttattctttaaacttttta 28299689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 752199 - 752262
Alignment:
Q  222 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagactt 285  Q
    |||||||| || |||||||||||| ||||||||| | | || ||||||||||| ||||||||||    
T  752199 tactttttcaagtttcaatgtgttgaatgcatcaatcccaagacaaaatttcttctttagactt 752262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 41311760 - 41311710
Alignment:
Q  222 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaattt 272  Q
    ||||||||||||||||||| |||||||||||| | ||  ||||||||||||    
T  41311760 tactttttaaactttcaatttgttaaatgcataattttcaaaacaaaattt 41311710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 42983941 - 42983905
Alignment:
Q  217 aaagctactttttaaactttcaatgtgttaaatgcat 253  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  42983941 aaagttactttttaaattttcaatgtgttaaatgcat 42983905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University