View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4422-Insertion-4 (Length: 149)
Name: NF4422-Insertion-4
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422-Insertion-4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 2e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 21203418 - 21203560
Alignment:
| Q |
7 |
attctttaagaggaaatataaaacatgacattaatatctatctagcttctgaagtgaaatattagatataactttcttcttactttggtaacaagaactt |
106 |
Q |
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| T |
21203418 |
attctttaagaggaaatataaaacatgacattaatatctatctagcttctgaagtgaaatattagatataactttcttcttactttggtaacaagaactt |
21203517 |
T |
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| Q |
107 |
gttgagagtgatattcgaccaataatgatccaatctttgttca |
149 |
Q |
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| T |
21203518 |
gttgagagtgatattcgaccaataatgatccaatctttgttca |
21203560 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 21196928 - 21196999
Alignment:
| Q |
78 |
ctttcttcttactttggtaacaagaacttgttgagagtgatattcgaccaataatgatccaatctttgttca |
149 |
Q |
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| T |
21196928 |
ctttcttcttattttggcaacaagaacatgttgagagtgatatctgaccaataatgatccaatctttgttca |
21196999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21196894 - 21196926
Alignment:
| Q |
18 |
ggaaatataaaacatgacattaatatctatcta |
50 |
Q |
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| T |
21196894 |
ggaaatataaaacatgacattaatatctatcta |
21196926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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