View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4422_low_1 (Length: 1070)

Name: NF4422_low_1
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4422_low_1
NF4422_low_1
[»] chr6 (9 HSPs)
chr6 (85-383)||(26976683-26976991)
chr6 (125-383)||(27874549-27874807)
chr6 (127-380)||(18967290-18967543)
chr6 (258-380)||(21965603-21965725)
chr6 (218-351)||(1472398-1472531)
chr6 (125-184)||(30968569-30968628)
chr6 (118-244)||(21966489-21966610)
chr6 (85-132)||(1234419-1234466)
chr6 (127-159)||(1472346-1472378)
[»] chr3 (5 HSPs)
chr3 (125-380)||(54545367-54545622)
chr3 (85-383)||(5819065-5819373)
chr3 (218-378)||(42589172-42589332)
chr3 (85-132)||(5823827-5823874)
chr3 (127-159)||(42589352-42589384)
[»] chr4 (5 HSPs)
chr4 (98-383)||(48697635-48697919)
chr4 (98-383)||(30945997-30946281)
chr4 (125-383)||(42270122-42270380)
chr4 (218-351)||(2003134-2003267)
chr4 (85-132)||(24520577-24520624)
[»] chr5 (2 HSPs)
chr5 (125-383)||(34359408-34359666)
chr5 (125-383)||(41722629-41722887)
[»] chr2 (3 HSPs)
chr2 (125-383)||(829698-829956)
chr2 (125-380)||(28715295-28715548)
chr2 (125-379)||(13840766-13841023)
[»] chr8 (3 HSPs)
chr8 (125-383)||(9439931-9440189)
chr8 (218-378)||(24594424-24594584)
chr8 (127-159)||(24594372-24594404)
[»] scaffold0074 (1 HSPs)
scaffold0074 (127-383)||(27877-28133)
[»] chr7 (4 HSPs)
chr7 (127-380)||(2323956-2324208)
chr7 (218-351)||(7504696-7504829)
chr7 (152-367)||(22510152-22510368)
chr7 (219-348)||(37957033-37957162)
[»] chr1 (2 HSPs)
chr1 (218-379)||(34973704-34973861)
chr1 (118-375)||(41413415-41413670)
[»] scaffold1880 (1 HSPs)
scaffold1880 (85-132)||(40-87)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 85 - 383
Target Start/End: Original strand, 26976683 - 26976991
Alignment:
Q  85 atgtggtaattccacaaaagtgtgctttaccactttcctgtgtt----------cacaatctcccacttaaagtcacttttgtgagcattcaaaatctct 174  Q
    ||||||||||||||||||||||||||||||||||||| ||||||          |||||||||||||||||||||||||||||||||||||||| | |||    
T  26976683 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttct 26976782  T
Q  175 ctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgct 274  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976783 ctactttgccaacttcagttgctacgtttccaataggccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgct 26976882  T
Q  275 aggttatcatttgtgtgaatcttctgcatatccacacttccttcctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaat 374  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26976883 aggttatcattagtgtgaatcttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacacctatgtgcttcgtccttgaat 26976982  T
Q  375 gaaaagctg 383  Q
    |||||||||    
T  26976983 gaaaagctg 26976991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 125 - 383
Target Start/End: Original strand, 27874549 - 27874807
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||| |||||| | ||||    
T  27874549 tgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggccatacaaagatc 27874648  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  27874649 gacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcctctac 27874748  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  27874749 tacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctg 27874807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 127 - 380
Target Start/End: Complemental strand, 18967543 - 18967290
Alignment:
Q  127 ttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttca-gttgctacgtttccaatagaccatacgaggatcg 225  Q
    |||||||||||||||||||||  ||||||| |||| | ||||||||||||||||| || | |||| ||||||| |||| |||||| ||||| ||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttaccca-ttcatgttgctatgttttcaataggccataggaggatcg 18967445  T
Q  226 acaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctact 325  Q
    ||||||||||||||||||||  ||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||    
T  18967444 acaccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctccact 18967345  T
Q  326 acttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaag 380  Q
    |||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||    
T  18967344 acttgtcgaacaaaatgatatttaacgcctatgtgtttcgtccttgaatgaaaag 18967290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 258 - 380
Target Start/End: Complemental strand, 21965725 - 21965603
Alignment:
Q  258 ttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctactacttctcgaacaaaatgatattgaacgccaat 357  Q
    |||||||||||||| ||||||||||||| ||||||   |||||||||||||| |||| |||||  |||||||||| |||||||| ||||||||||||  |    
T  21965725 ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcctgt 21965626  T
Q  358 gtgcttcgtccttgaatgaaaag 380  Q
    ||||| ||| |||||||||||||    
T  21965625 gtgctccgttcttgaatgaaaag 21965603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 1472398 - 1472531
Alignment:
Q  218 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttcctt 317  Q
    ||||||||||||||| |||| |||||||  ||||| | ||||||||| ||||||||||  || || || |||||||| ||||||||||| ||||| | ||    
T  1472398 gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccttt 1472497  T
Q  318 cctctactacttctcgaacaaaatgatattgaac 351  Q
     |||||||||||||||||||||||| ||||||||    
T  1472498 tctctactacttctcgaacaaaatggtattgaac 1472531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 30968628 - 30968569
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgcc 184  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30968628 tgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc 30968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 21966610 - 21966489
Alignment:
Q  118 tttcctgtgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttc-agttgctacgtttccaatagaccata 216  Q
    |||||| |||||||||| ||||||||| || ||||||||| ||  |||||||||||||||||||||||||| |   ||||||||||||      | ||||    
T  21966610 tttcctatgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttc------aacata 21966517  T
Q  217 cgaggatcgacaccatataaacttgtca 244  Q
    ||||||||||||||||| ||||||||||    
T  21966516 cgaggatcgacaccatacaaacttgtca 21966489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 1234466 - 1234419
Alignment:
Q  85 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 132  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1234466 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 1234419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 1472346 - 1472378
Alignment:
Q  127 ttcacaatctcccacttaaagtcacttttgtga 159  Q
    |||||||||||||||||||||||||||||||||    
T  1472346 ttcacaatctcccacttaaagtcacttttgtga 1472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 125 - 380
Target Start/End: Complemental strand, 54545622 - 54545367
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  54545622 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggccatacgaggatc 54545523  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  54545522 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcctctac 54545423  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaag 380  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  54545422 tacttctcgaataaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaag 54545367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 85 - 383
Target Start/End: Original strand, 5819065 - 5819373
Alignment:
Q  85 atgtggtaattccacaaaagtgtgctttaccactttcctgtgtt----------cacaatctcccacttaaagtcacttttgtgagcattcaaaatctct 174  Q
    ||||||||||||||||||||||||||||||||||||| ||||||          |||||||||||||||||||| ||||||||||||||||||| | |||    
T  5819065 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttct 5819164  T
Q  175 ctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgct 274  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  5819165 ctactttgccaacttcagttgctacgtttccaataggccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgct 5819264  T
Q  275 aggttatcatttgtgtgaatcttctgcatatccacacttccttcctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaat 374  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5819265 aggttatcattagtgtgaatcttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaat 5819364  T
Q  375 gaaaagctg 383  Q
    |||||||||    
T  5819365 gaaaagctg 5819373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 42589332 - 42589172
Alignment:
Q  218 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttcctt 317  Q
    ||||||| ||||||| |||| |||||||  ||||| | ||||||||| | ||||||||  || || || |||||||| ||||||||||| ||||| ||||    
T  42589332 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataatatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 42589233  T
Q  318 cctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaa 378  Q
     |||||| ||||||||||||||||| |||||||| || ||||| || || || ||||||||    
T  42589232 tctctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaa 42589172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 5823827 - 5823874
Alignment:
Q  85 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 132  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5823827 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 5823874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 42589384 - 42589352
Alignment:
Q  127 ttcacaatctcccacttaaagtcacttttgtga 159  Q
    |||||||||||||||||||||||||||||||||    
T  42589384 ttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 98 - 383
Target Start/End: Original strand, 48697635 - 48697919
Alignment:
Q  98 acaaaagtgtgctttaccactttcctgtgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgct 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||    
T  48697635 acaaaagtg-gctttaccactttcctgtgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgct 48697733  T
Q  198 acgtttccaatagaccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatctt 297  Q
    ||||||||||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  48697734 acgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatctt 48697833  T
Q  298 ctgcatatccacacttccttcctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  48697834 ctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctg 48697919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 98 - 383
Target Start/End: Original strand, 30945997 - 30946281
Alignment:
Q  98 acaaaagtgtgctttaccactttcctgtgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgct 197  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| || ||||| ||||||    
T  30945997 acaaaagtg-gctttaccactttcctgtgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgct 30946095  T
Q  198 acgtttccaatagaccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatctt 297  Q
    ||||||||||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  30946096 acgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatctt 30946195  T
Q  298 ctgcatatccacacttccttcctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  30946196 ctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctg 30946281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 125 - 383
Target Start/End: Complemental strand, 42270380 - 42270122
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||| |||||| | ||||    
T  42270380 tgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggccatacaaagatc 42270281  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  42270280 gacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcctctac 42270181  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  42270180 tacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctg 42270122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 2003267 - 2003134
Alignment:
Q  218 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttcctt 317  Q
    ||||||||||||||| |||| ||||||   ||||| | ||||||||| ||||||||||  || || || |||||||| ||||||||||| ||||| ||||    
T  2003267 gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 2003168  T
Q  318 cctctactacttctcgaacaaaatgatattgaac 351  Q
     |||||| ||||||||||||||||| ||||||||    
T  2003167 tctctaccacttctcgaacaaaatggtattgaac 2003134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 24520577 - 24520624
Alignment:
Q  85 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 132  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24520577 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 24520624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 125 - 383
Target Start/End: Complemental strand, 34359666 - 34359408
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  34359666 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 34359567  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||    
T  34359566 gacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccctcctccac 34359467  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359466 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 34359408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 125 - 383
Target Start/End: Complemental strand, 41722887 - 41722629
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  41722887 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 41722788  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  41722787 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 41722688  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  41722687 tacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctg 41722629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 125 - 383
Target Start/End: Complemental strand, 829956 - 829698
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    |||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  829956 tgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgaggatc 829857  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  829856 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttccttcctctac 829757  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  829756 tacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctg 829698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 125 - 380
Target Start/End: Complemental strand, 28715548 - 28715295
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    |||||||||||||||||||||||  || ||| | || ||||||||||||||||||| ||||||||| |||||||| ||| |||||| ||||| |||||||    
T  28715548 tgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgaggatc 28715449  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    ||||| ||| |||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||| ||||| ||    
T  28715448 gacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacac-tccctcctccac 28715350  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaag 380  Q
     ||| |||||||||||||||||||||| || ||||||||| |||||||| ||||||    
T  28715349 -actactcgaacaaaatgatattgaacacctatgtgcttcatccttgaacgaaaag 28715295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 125 - 379
Target Start/End: Original strand, 13840766 - 13841023
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacg----ag 220  Q
    |||| |||||||| ||||||||   |||||||||||| |  ||||| ||||| |||||||||||   ||||||| |||||||||||  |||||     ||    
T  13840766 tgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcccag 13840865  T
Q  221 gatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcct 320  Q
    ||||||| ||||| |||||| | ||  |||||||| |||||||  ||||| | |||||||||| |||| ||||||||||||| ||||| ||||||||| |    
T  13840866 gatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttccttcgt 13840965  T
Q  321 ctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaa 379  Q
    | ||||||| | ||||||||||||||||||| |  ||||| || |||||||||||||||    
T  13840966 cgactactt-ttgaacaaaatgatattgaacacttatgtgttttgtccttgaatgaaaa 13841023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 125 - 383
Target Start/End: Original strand, 9439931 - 9440189
Alignment:
Q  125 tgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatc 224  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  9439931 tgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggccatacgaagatc 9440030  T
Q  225 gacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctac 324  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9440031 gacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcctctac 9440130  T
Q  325 tacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  9440131 tacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctg 9440189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 218 - 378
Target Start/End: Original strand, 24594424 - 24594584
Alignment:
Q  218 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttcctt 317  Q
    ||||||| ||||||| |||| |||||||  ||||| | ||||||||| ||||||||||  || || || |||||||| ||||||||||| ||||| ||||    
T  24594424 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 24594523  T
Q  318 cctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaa 378  Q
     |||||| ||||||||||||||||| |||||||| || ||||| || || || ||||||||    
T  24594524 tctctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaa 24594584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 24594372 - 24594404
Alignment:
Q  127 ttcacaatctcccacttaaagtcacttttgtga 159  Q
    |||||||||||||||||||||||||||||||||    
T  24594372 ttcacaatctcccacttaaagtcacttttgtga 24594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 150; Significance: 9e-79; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 127 - 383
Target Start/End: Original strand, 27877 - 28133
Alignment:
Q  127 ttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttca-gttgctacgtttccaatagaccatacgaggatcg 225  Q
    |||||||||||||||||||||  ||||||| |||| | |||||||||| ||||||||| | |||| ||||||||||||||||||| ||||| ||||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgccca-ttcatgttgctacgtttccaataggccataggaggatcg 27975  T
Q  226 acaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctact 325  Q
    ||||||||||||||||||||  ||||| || ||||| || |||||| |||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||    
T  27976 acaccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccctcctccact 28075  T
Q  326 acttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctg 383  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  28076 acttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctg 28133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 6e-77; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 127 - 380
Target Start/End: Original strand, 2323956 - 2324208
Alignment:
Q  127 ttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttca-gttgctacgtttccaatagaccatacgaggatcg 225  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| |||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgccca-ttcatgttgctacgtttccaatagtccatacgatgatcg 2324054  T
Q  226 acaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctact 325  Q
    ||||||||||||||||  ||  ||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| ||||    
T  2324055 acaccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccctcctttact 2324154  T
Q  326 acttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaag 380  Q
    |||||||||||||||||||| |||||| |||||| ||| ||| ||||||||||||    
T  2324155 acttctcgaacaaaatgata-tgaacgtcaatgttctttgtctttgaatgaaaag 2324208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 7504696 - 7504829
Alignment:
Q  218 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttcctt 317  Q
    ||||||||||||||| |||| |||||||| ||||| | ||||||||| ||||||||||  || || || |||||||| || |||||||| ||||| ||||    
T  7504696 gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacactccctt 7504795  T
Q  318 cctctactacttctcgaacaaaatgatattgaac 351  Q
     |||||| ||||||||||||||||| ||||||||    
T  7504796 tctctaccacttctcgaacaaaatggtattgaac 7504829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 152 - 367
Target Start/End: Complemental strand, 22510368 - 22510152
Alignment:
Q  152 ttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatacgaggatcgacaccatataaacttgtcagtgttga 251  Q
    ||||| |||| |||||||| ||||||||||||||||| | ||| ||| ||||  ||||| ||| |   |||| |||||||||||||||| ||| | ||||    
T  22510368 ttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagagggattgacaccatataaacttatcaatattga 22510269  T
Q  252 tcgg-ctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttcctctactacttctcgaacaaaatgatattgaa 350  Q
    |  | |||| |||| ||||||||| |||||||||  || ||||||||| |||||||||||  ||| ||||| || |||  |  || |||||| |||||||    
T  22510268 ttagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctcctccacaactaatacaaaaaaatggtattgaa 22510169  T
Q  351 cgccaatgtgcttcgtc 367  Q
    ||||  ||||| |||||    
T  22510168 cgcctttgtgcatcgtc 22510152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 37957162 - 37957033
Alignment:
Q  219 aggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttccttc 318  Q
    |||||||||| ||||||||||| |||   || || | ||||||||| |||  ||||||   ||| ||  |||||||||  ||||| ||||||||||||||    
T  37957162 aggatcgacatcatataaacttatcaccattaattgactttgtcatcacacttgctagacaatctttattgtgaatctattgcatgtccacacttccttc 37957063  T
Q  319 ctctactacttctcgaacaaaatgatattg 348  Q
    |||||||||||| | |||| ||||||||||    
T  37957062 ctctactacttcgcaaacataatgatattg 37957033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 218 - 379
Target Start/End: Complemental strand, 34973861 - 34973704
Alignment:
Q  218 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatcttctgcatatccacacttcctt 317  Q
    ||||||| ||| ||||||||||||||| | |||||    |||||| | ||||||  |||||||||||| |||||||||||| |||||||||||||||  |    
T  34973861 gaggatcaacaacatataaacttgtcaatattgat----tttgtcgtcacatcttttaggttatcattagtgtgaatcttcagcatatccacacttctct 34973766  T
Q  318 cctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaa 379  Q
    | || |||||||||| || ||||||||||| || ||| || |||||||||||||||||||||    
T  34973765 cttccactacttctcaaataaaatgatattaaatgcctatttgcttcgtccttgaatgaaaa 34973704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 375
Target Start/End: Original strand, 41413415 - 41413670
Alignment:
Q  118 tttcctgtgttcacaatctcccacttaaagtcacttttgtgagcattcaaaatctctctaccttgccaacttcagttgctacgtttccaatagaccatac 217  Q
    |||| |||||||||||||| ||| |||||   ||||||| |||| |||||||| ||||| ||||||| | |   ||||||| ||||| ||||||||| ||    
T  41413415 tttcttgtgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaac 41413514  T
Q  218 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcatttgtgtgaatctt-----ctgcatatccacact 312  Q
    ||| |||||    ||||||||||||||   ||||| || ||||   ||| ||||  ||||||| |||| ||||| |||||      |||||||||||| |    
T  41413515 gagaatcga---tatataaacttgtcaccattgattggttttg---ttagatctattaggttaccattagtgtgtatcttttgcattgcatatccacatt 41413608  T
Q  313 tccttcctctactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatg 375  Q
    |||||| || | ||||||| |||||||||||||||||||||| |  ||| | |||||||||||    
T  41413609 tccttcatccattacttct-gaacaaaatgatattgaacgcctacatgccttgtccttgaatg 41413670  T

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Target: scaffold1880 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1880
Description:

Target: scaffold1880; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 40 - 87
Alignment:
Q  85 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 132  Q
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T  40 atgtggtaattccgcaaaagtgtgctttactactttcatgtgttcaca 87  T

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