View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4422_low_11 (Length: 333)
Name: NF4422_low_11
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 47852062 - 47852366
Alignment:
| Q |
22 |
agtagccacaaagattaaacgattatggtataatactacctgataacccaaatcactggcaatttcaatgacactttttcttgtgattccggaaagtatg |
121 |
Q |
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| T |
47852062 |
agtagccacaaagattaaacgattatggtataatactacctgataacccaaatcactgccaatttcaatgacactttttcttgtgattccggaaagtatg |
47852161 |
T |
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| Q |
122 |
gttccactgatagcaggcgttgaaatggttttgccctaagaaattgaaatccaagttagatcgagatcgtttgaccagttgcaaatataacagatagaat |
221 |
Q |
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| T |
47852162 |
gttccactgatagcaggcgttgaaatggttttgccctaagaaattgaaatccaagttagattgagatcgtttgaccagttgcaaatataacagatagaat |
47852261 |
T |
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| Q |
222 |
atagtacatattgagtttcaccaaatcagttagaacatgcacaactaggaaagtaacaattcatgcgattatccgaaaaccagaatttaaataaacccta |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47852262 |
atagtacatattgagtttcaccaaatcagttagaacatgcacaactaggaaagtaacaattcatgcgattatccgaaaaccagaatttaaataaacccta |
47852361 |
T |
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| Q |
322 |
tgctt |
326 |
Q |
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||||| |
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| T |
47852362 |
tgctt |
47852366 |
T |
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