View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4422_low_12 (Length: 256)
Name: NF4422_low_12
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 32833203 - 32833426
Alignment:
| Q |
17 |
cataggaacaaaaaatggaagatta---gttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaat |
113 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833203 |
cataggaacaaaaaatggaacattattagttcatagttttgaagaagtaagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaat |
32833302 |
T |
|
| Q |
114 |
atgggagttttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
213 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833303 |
atgagagttttgaaaggagatggtttgaaaaaagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
32833402 |
T |
|
| Q |
214 |
gcactaatggtgataggttttaaa |
237 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
32833403 |
gcactaatgatgataggttttaaa |
32833426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 32846484 - 32846707
Alignment:
| Q |
17 |
cataggaacaaaaaatggaagatta---gttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaat |
113 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32846484 |
cataggaacaaaaaatggaacattattagttcatagttttgaagaagtaagaaagtttgagcaaatgttgcaagtgtgatgctacaaagccataggaaat |
32846583 |
T |
|
| Q |
114 |
atgggagttttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
213 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32846584 |
atgagagttttgaaaggagatggtttgaaaaaagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
32846683 |
T |
|
| Q |
214 |
gcactaatggtgataggttttaaa |
237 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
32846684 |
gcactaatgatgataggttttaaa |
32846707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 17931440 - 17931252
Alignment:
| Q |
17 |
cataggaacaaaaaatggaagattagttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaatatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
17931440 |
cataggaacaaaaaatggaagattagttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtatgatgctacaaaggaataggaaatatg |
17931341 |
T |
|
| Q |
117 |
ggagttttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccata |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||| |
|
|
| T |
17931340 |
agagttttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggcttttcttggaagtggcttccata |
17931252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 46187956 - 46187775
Alignment:
| Q |
26 |
aaaaaatggaagattagttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaatatgggagttttg |
125 |
Q |
| |
|
|||| |||||| ||| ||||||||||||| |||| | |||| |||| | |||||||||| ||||| |||||| ||||||||||||||| || || | || |
|
|
| T |
46187956 |
aaaacatggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtg |
46187857 |
T |
|
| Q |
126 |
aaaggagatggtttgataagagagtgaagttggtgcattcattgac---agggtcatggttttgcttggatgtagcttccat |
204 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||| || | |||||||| ||||||| ||||||||||| |
|
|
| T |
46187856 |
aaacgagatagtttgataagagagtgaagttggtgcattcattgaagatagagacatggtttggcttggaagtagcttccat |
46187775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University