View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4422_low_14 (Length: 234)
Name: NF4422_low_14
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 8544303 - 8544092
Alignment:
| Q |
18 |
aaatgattggaggataatgagtggggggttgtattagcaaaatggagcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaattt |
117 |
Q |
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| T |
8544303 |
aaatgattggcggataatgagtggggggttgtattagcaaaatggagcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaattt |
8544204 |
T |
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| Q |
118 |
gcattt------gcatagaggatcctggcgcagaagcaataaacataagttgaag----tgaatgaatgataaatagtgaaggaaggaaggagtattaaa |
207 |
Q |
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| T |
8544203 |
gcatttgcatttgcatagaagatcctggcgcagaagcaataaacataagttgaagtgaatgaatgaatgataaatagtgaaggaatgaaggagtattaaa |
8544104 |
T |
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| Q |
208 |
ttaccttctgtg |
219 |
Q |
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|||||||||||| |
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| T |
8544103 |
ttaccttctgtg |
8544092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 8609542 - 8609331
Alignment:
| Q |
18 |
aaatgattggaggataatgagtggggggttgtattagcaaaatggagcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaattt |
117 |
Q |
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| T |
8609542 |
aaatgattggcggataatgagtggggggttgtattagcaaaatggagcagtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaattt |
8609443 |
T |
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| Q |
118 |
gcattt------gcatagaggatcctggcgcagaagcaataaacataagttgaag----tgaatgaatgataaatagtgaaggaaggaaggagtattaaa |
207 |
Q |
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| T |
8609442 |
gcatttgcatttgcatagaagatcctggcgcagaagcaataaacataagttgaagtgaatgaatgaatgataaatagtgaaggaatgaaggagtattaaa |
8609343 |
T |
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| Q |
208 |
ttaccttctgtg |
219 |
Q |
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|||||||||||| |
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| T |
8609342 |
ttaccttctgtg |
8609331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 25014599 - 25014527
Alignment:
| Q |
66 |
agtaagtgggaagcctttattctgtcaccggagcggagtgccttcacaatttgcatttgcatagaggatcctg |
138 |
Q |
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|||||||||||||||||| |||| ||||||||| |||||||||| || ||||||| ||||| ||| ||||||| |
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| T |
25014599 |
agtaagtgggaagccttttttctctcaccggagtggagtgccttgactatttgcagttgcacagacgatcctg |
25014527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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