View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4422_low_15 (Length: 229)
Name: NF4422_low_15
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 27356447 - 27356249
Alignment:
| Q |
20 |
ctgatatctaataggatgagtgttgaagaaataagggattttattggatctgattcacttgcttttcttccaattaatagcttgcatagtatgttgggta |
119 |
Q |
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| T |
27356447 |
ctgatatctaataggatgagtgttgaagaaataagggattttattggatctgattcacttgcttttcttccaattaatagcttgcatagtatgttgggta |
27356348 |
T |
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| Q |
120 |
atgattctcctaatttttgttatgcttgtttctccgggaaataccctgttgagcctagagagcttaaggttaaaagggttggtgactttgttgatgatg |
218 |
Q |
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| T |
27356347 |
atgattctcctaatttttgttatgcttgtttctctgggaaataccctgttgagcctagagagcttaaggttaaaagggttggtgactttgttgatgatg |
27356249 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 55060261 - 55060106
Alignment:
| Q |
21 |
tgatatctaataggatgagtgttgaagaaataagggattttattggatctgattcacttgcttttcttccaattaatagcttgcatagtatgttgggtaa |
120 |
Q |
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| T |
55060261 |
tgatatctaataggatgagtgtggctgggattaaggaatttattcgttgtgattcccttgcttttctacctatggatagtttgaagaagttgttgggtga |
55060162 |
T |
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| Q |
121 |
tgattctcctaatttttgttatgcttgtttctccgggaaataccctgttgagccta |
176 |
Q |
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| T |
55060161 |
tgattcttctaatttctgttatgcttgtttcactgggaattatcctgttgaaccta |
55060106 |
T |
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