View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4422_low_16 (Length: 211)
Name: NF4422_low_16
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 28664215 - 28664035
Alignment:
| Q |
15 |
catagggaaataataatatcatataactaattgacattaacgtaacgacaatcctttcgaatttcaccttgatctccagtaagaggattattctctgata |
114 |
Q |
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| T |
28664215 |
catagcgaaataatcatatcatataactaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctccggtaagaggattattctccgata |
28664116 |
T |
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| Q |
115 |
acaattgaacagcccttgagaattgttcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttg |
195 |
Q |
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| T |
28664115 |
acaattgaacagcccttgagaattgttcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttg |
28664035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 28606834 - 28606680
Alignment:
| Q |
41 |
ctaattgacattaacgtaacgacaatcctttcgaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
140 |
Q |
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| T |
28606834 |
ctaattggcattaacgtaacggcaatcctttctaatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgt |
28606735 |
T |
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| Q |
141 |
tcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttg |
195 |
Q |
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| T |
28606734 |
tcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttg |
28606680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 28636624 - 28636465
Alignment:
| Q |
36 |
tataactaattgacattaacgtaacgacaatcctttcgaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgaga |
135 |
Q |
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| T |
28636624 |
tatatctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgaga |
28636525 |
T |
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| Q |
136 |
attgttcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttg |
195 |
Q |
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| T |
28636524 |
attgttcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttg |
28636465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 35 - 191
Target Start/End: Complemental strand, 28657119 - 28656963
Alignment:
| Q |
35 |
atataactaattgacattaacgtaacgacaatcctttcgaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgag |
134 |
Q |
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| T |
28657119 |
atatatctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaaaagaacagcccttgag |
28657020 |
T |
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| Q |
135 |
aattgttcattgaagtatccattatcagctgccatctttttcacataaggtgatgtt |
191 |
Q |
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| T |
28657019 |
aattggtcattgaagtaaccattatcatctgccattttttgtacataaggtgatgtt |
28656963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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