View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4422_low_3 (Length: 609)

Name: NF4422_low_3
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4422_low_3
NF4422_low_3
[»] chr3 (13 HSPs)
chr3 (1-604)||(1401585-1402188)
chr3 (17-243)||(1409151-1409377)
chr3 (442-550)||(44720821-44720929)
chr3 (430-508)||(45153511-45153589)
chr3 (430-550)||(52685120-52685240)
chr3 (432-548)||(43817067-43817185)
chr3 (438-541)||(31375472-31375575)
chr3 (429-512)||(31437802-31437885)
chr3 (433-508)||(23073652-23073727)
chr3 (430-473)||(54987270-54987313)
chr3 (510-540)||(16003678-16003708)
chr3 (433-507)||(23090670-23090744)
chr3 (430-475)||(48600645-48600690)
[»] chr4 (12 HSPs)
chr4 (430-559)||(41899031-41899161)
chr4 (430-550)||(6167773-6167893)
chr4 (430-563)||(5168470-5168603)
chr4 (442-550)||(24858590-24858698)
chr4 (453-516)||(42563403-42563466)
chr4 (432-525)||(38868829-38868922)
chr4 (430-551)||(3167190-3167311)
chr4 (430-523)||(8839705-8839797)
chr4 (430-489)||(3784073-3784132)
chr4 (430-485)||(36832845-36832899)
chr4 (430-550)||(4197229-4197350)
chr4 (511-547)||(26009789-26009825)
[»] chr1 (16 HSPs)
chr1 (430-547)||(25129876-25129993)
chr1 (430-550)||(8472376-8472492)
chr1 (67-205)||(40682374-40682513)
chr1 (432-525)||(36995264-36995357)
chr1 (449-525)||(15646910-15646986)
chr1 (430-526)||(1609705-1609800)
chr1 (430-508)||(2748562-2748640)
chr1 (432-550)||(48902879-48902997)
chr1 (448-548)||(49899079-49899179)
chr1 (439-502)||(37494043-37494106)
chr1 (442-547)||(45584289-45584394)
chr1 (433-553)||(18407416-18407535)
chr1 (432-516)||(34620650-34620734)
chr1 (430-550)||(44697993-44698113)
chr1 (448-552)||(1411641-1411745)
chr1 (461-525)||(52698420-52698484)
[»] chr5 (13 HSPs)
chr5 (430-550)||(15965761-15965881)
chr5 (430-485)||(1352369-1352424)
chr5 (431-507)||(19366981-19367056)
chr5 (430-509)||(1355370-1355448)
chr5 (471-537)||(4613063-4613129)
chr5 (432-549)||(1863067-1863184)
chr5 (453-494)||(9515542-9515583)
chr5 (430-507)||(38370531-38370608)
chr5 (430-550)||(41174332-41174452)
chr5 (432-547)||(19608742-19608856)
chr5 (432-494)||(4462579-4462641)
chr5 (435-485)||(36302643-36302693)
chr5 (523-563)||(31559197-31559237)
[»] chr2 (11 HSPs)
chr2 (430-549)||(41252775-41252896)
chr2 (430-547)||(19002777-19002894)
chr2 (430-521)||(32838660-32838751)
chr2 (458-522)||(33847482-33847546)
chr2 (432-521)||(752182-752271)
chr2 (514-553)||(38788704-38788743)
chr2 (430-508)||(42887029-42887110)
chr2 (430-508)||(38042465-38042543)
chr2 (430-499)||(1388503-1388572)
chr2 (440-541)||(11074541-11074642)
chr2 (473-545)||(1900596-1900668)
[»] chr7 (19 HSPs)
chr7 (430-542)||(38912918-38913030)
chr7 (442-549)||(5909042-5909149)
chr7 (430-516)||(7728605-7728691)
chr7 (431-516)||(21275642-21275727)
chr7 (434-516)||(23828919-23829001)
chr7 (430-516)||(34963398-34963484)
chr7 (430-480)||(46683051-46683101)
chr7 (433-550)||(28198044-28198161)
chr7 (430-516)||(25874372-25874458)
chr7 (430-508)||(38663641-38663719)
chr7 (430-500)||(46096747-46096817)
chr7 (471-550)||(36595340-36595419)
chr7 (474-512)||(16099965-16100003)
chr7 (457-507)||(18662356-18662406)
chr7 (430-472)||(29654367-29654409)
chr7 (442-507)||(24463757-24463822)
chr7 (442-494)||(5000353-5000405)
chr7 (452-512)||(40037726-40037786)
chr7 (451-527)||(46152270-46152346)
[»] chr6 (5 HSPs)
chr6 (448-550)||(1147800-1147896)
chr6 (440-537)||(8082495-8082592)
chr6 (430-525)||(33605055-33605150)
chr6 (453-549)||(24396824-24396920)
chr6 (432-500)||(31597553-31597621)
[»] scaffold0016 (2 HSPs)
scaffold0016 (430-512)||(79991-80073)
scaffold0016 (499-547)||(80096-80144)
[»] chr8 (10 HSPs)
chr8 (430-525)||(42631679-42631774)
chr8 (430-516)||(44814058-44814142)
chr8 (453-550)||(32615798-32615895)
chr8 (430-550)||(34496912-34497032)
chr8 (440-525)||(14955259-14955344)
chr8 (430-479)||(28827607-28827656)
chr8 (442-475)||(45197812-45197845)
chr8 (453-485)||(5323633-5323665)
chr8 (438-550)||(20305673-20305785)
chr8 (438-550)||(21092306-21092418)
[»] scaffold0236 (1 HSPs)
scaffold0236 (430-516)||(20152-20238)
[»] scaffold0074 (1 HSPs)
scaffold0074 (460-549)||(29751-29840)


Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 1401585 - 1402188
Alignment:
Q  1 cttaccttttaaacaacagttttgcaaaacttgctacgtatttacctgtctgagaggtggaagtgtagtttgatgagctgctggaggaaaaactggtttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401585 cttaccttttaaacaacagttttgcaaaacttgctacgtatttacctgtctgagaggtggaagtgtagtttgatgagctgctggaggaaaaactggtttc 1401684  T
Q  101 actggtattatctataatgcttccatcaatctctgtgtctgacggccgtatggacaattttcctttggcaacggcataaactgtacaaaatcttggagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401685 actggtattatctataatgcttccatcaatctctgtgtctgacggccgtatggacaattttcctttggcaacggcataaactgtacaaaatcttggagtg 1401784  T
Q  201 cataccgatatttttgcagaaatgcccttatgtttgctgaaaggagttattcaaaaggagtaggatcagataaagatcagaaaagaagtcaatgacagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401785 cataccgatatttttgcagaaatgcccttatgtttgctgaaaggagttattcaaaaggagtaggatcagataaagatcagaaaagaagtcaatgacagaa 1401884  T
Q  301 aagtgcctattaataaaagagatataaaatattggtaaatatatagatatatccattctaagcttttgtgcacggtaaaacgtaatgcttagaatatttc 400  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401885 aagtgcctattaataaaagagagataaaatattggtaaatatatagatatatccattctaagcttttgtgcacggtaaaacgtaatgcttagaatatttc 1401984  T
Q  401 tctcattttctnnnnnnngaaagggtcttaattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttc 500  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401985 tctcattttctaaaaaaagaaagggtcttaattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttc 1402084  T
Q  501 ttctttagtcttcttatcaagtgccttgagggcacttgttaacatttcccaaaaagaaattatttaagtaacctactttttgaagtgtttacatctctgc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1402085 ttctttagtcttcttatcaagtgccttgagggcacttgttaacatttcccaaaaagaaattatttaagtaacctactttttgaagtgtttacatctctgc 1402184  T
Q  601 tcct 604  Q
    ||||    
T  1402185 tcct 1402188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 1409151 - 1409377
Alignment:
Q  17 cagttttgcaaaacttgctacgtatttacctgtctgagaggtggaagtgtagtttgatgagctgctggaggaaaaactggtttcactggtattatctata 116  Q
    |||||||||||||||| |||| ||| |||||||||||| ||| ||||||||||| ||||||||||| |||||||||||| ||||||| || | |||| ||    
T  1409151 cagttttgcaaaacttcctacttatatacctgtctgagtggtagaagtgtagttcgatgagctgcttgaggaaaaactgatttcacttgtgtcatctgta 1409250  T
Q  117 atgcttccatcaatctctgtgtctgacggccgtatggacaattttcctttggcaacggcataaactgtacaaaatcttggagtgcataccgatatttttg 216  Q
    |||||| |||||||||    |||||| ||||||||  |||| |||||||| | ||| |||||||| ||||||||||||||||||||||| || |||||||    
T  1409251 atgctttcatcaatctgcacgtctgatggccgtatcaacaactttccttttgaaacagcataaaccgtacaaaatcttggagtgcatactgagatttttg 1409350  T
Q  217 cagaaatgcccttatgtttgctgaaag 243  Q
    |||| || ||||||||||| |||||||    
T  1409351 cagacatacccttatgtttactgaaag 1409377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 442 - 550
Target Start/End: Complemental strand, 44720929 - 44720821
Alignment:
Q  442 aaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgtta 541  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||| |||||||| ||||||||| ||| ||||||| || ||||||| | |||||||||||    
T  44720929 aaaaagttacttttgaaagttttaatgcattgaatgcaccattttcaagacaaaatttcttctctagacttcttaacaggtgccttcaaggcacttgtta 44720830  T
Q  542 acatttccc 550  Q
     ||||||||    
T  44720829 gcatttccc 44720821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 430 - 508
Target Start/End: Complemental strand, 45153589 - 45153511
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttag 508  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| || |||| ||||||||    
T  45153589 aattttaagtagaaaaagttactttataaagtttcaatgcattgaatgcaccattttcaagataaaatttattctttag 45153511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 550
Target Start/End: Original strand, 52685120 - 52685240
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    |||||||| |||||||| |||| |||||  ||||| ||||||||||||||| ||||| ||||  | ||||||||||||  |||||||  |||||   | |    
T  52685120 aattttaaatagaaaaatttactttttatcgtttctatgcattgaatgcacaatttctaagatgaaatttcttctttaaacttcttaataagtgttgtaa 52685219  T
Q  530 gggcacttgttaacatttccc 550  Q
    |||||||||||||||||||||    
T  52685220 gggcacttgttaacatttccc 52685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 43817185 - 43817067
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaa--gtgccttga 529  Q
    ||||| ||||||||||||| |||||||| ||| || |  ||||||||| |||||| |||||||  ||| |||||||| |||| || |||  |||||||||    
T  43817185 ttttatgtagaaaaagttaaattttaaatttttaacgtgttgaatgcatcatttctaagacaattttttttctttagacttcgtaacaagtgtgccttga 43817086  T
Q  530 gggcacttgttaacatttc 548  Q
    || ||||||||||||||||    
T  43817085 ggacacttgttaacatttc 43817067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 541
Target Start/End: Complemental strand, 31375575 - 31375472
Alignment:
Q  438 gtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcactt 537  Q
    |||||||| ||| | ||||||||||||||||  |||||| ||| |||||||||| || ||||||| ||||| ||||| | ||||||||   |||||||||    
T  31375575 gtagaaaatgttcctttttaaagtttcaatgtgttgaatacacaatttccaagaaaaaatttcttatttagacttctaaacaagtgccccaagggcactt 31375476  T
Q  538 gtta 541  Q
    ||||    
T  31375475 gtta 31375472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 512
Target Start/End: Complemental strand, 31437885 - 31437802
Alignment:
Q  429 taattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtctt 512  Q
    ||||||||| ||||||||||||  ||||||||||| |||| ||||||||| | ||||  ||||||| ||||||| |||||||||    
T  31437885 taattttaaatagaaaaagttattttttaaagtttgaatgtattgaatgcgctatttttaagacaaaatttcttttttagtctt 31437802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 23073727 - 23073652
Alignment:
Q  433 tttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttag 508  Q
    ||||| || |||||||||  ||||||||||||||| |||||||| ||||| || ||||| || ||||||| |||||    
T  23073727 tttaattataaaaagttatgttttaaagtttcaattcattgaatacaccaattacaagataaaatttcttttttag 23073652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 473
Target Start/End: Original strand, 54987270 - 54987313
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattg 473  Q
    ||||||||||||||||| | || |||||||||||||||||||||    
T  54987270 aattttaagtagaaaaaataactttttaaagtttcaatgcattg 54987313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 540
Target Start/End: Original strand, 16003678 - 16003708
Alignment:
Q  510 cttcttatcaagtgccttgagggcacttgtt 540  Q
    |||||||||||||||||||||||||||||||    
T  16003678 cttcttatcaagtgccttgagggcacttgtt 16003708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 23090744 - 23090670
Alignment:
Q  433 tttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttcttta 507  Q
    |||||||| |||||||||  || ||||||||||||||||||||| ||| | || ||||||||  ||| |||||||    
T  23090744 tttaagtataaaaagttattttctaaagtttcaatgcattgaatacactaatttcaagacaaatttttttcttta 23090670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 48600690 - 48600645
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaa 475  Q
    ||||||| ||||||||| |||| |||||||||||||||| ||||||    
T  48600690 aattttacgtagaaaaaattactttttaaagtttcaatgtattgaa 48600645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 430 - 559
Target Start/End: Complemental strand, 41899161 - 41899031
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  41899161 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaatatttcttctttagtcttcttatcaagtgtcttga 41899062  T
Q  530 gggcacttgttaacatttccca-aaaagaaa 559  Q
    |||||||| ||||||||||||| ||||||||    
T  41899061 gggcacttcttaacatttcccataaaagaaa 41899031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 430 - 550
Target Start/End: Complemental strand, 6167893 - 6167773
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||  ||| ||||||||||||| |||||||||||||||||||||    
T  6167893 aattttaagtaaaaaaagttacattttaaagtttcaatgcattgaatgcacaattttcagtacatcatttcttctttaatcttcttatcaagtgccttga 6167794  T
Q  530 gggcacttgttaacatttccc 550  Q
    | |||||||||||||||||||    
T  6167793 gagcacttgttaacatttccc 6167773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 430 - 563
Target Start/End: Complemental strand, 5168603 - 5168470
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||    
T  5168603 aattttaagtagaaaaaattatattttaaaatttcaatacattgaatgcaccatttccaagataacatttcttctttagtctttttatcaaatgtcttga 5168504  T
Q  530 gggcacttgttaacatttcccaaaaagaaattat 563  Q
    |||||||| ||||||||||||  ||| |||||||    
T  5168503 gggcacttattaacatttcccgtaaataaattat 5168470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 550
Target Start/End: Complemental strand, 24858698 - 24858590
Alignment:
Q  442 aaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgtta 541  Q
    ||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||  ||||| | |||| ||||||| ||||| ||||||||| ||||||||    
T  24858698 aaaaaattactttttaaaatttcaatgcattgaatgcatcatttccaagacaaagtttctacgttagacttcttaacaagtaccttgagggaacttgtta 24858599  T
Q  542 acatttccc 550  Q
     ||||||||    
T  24858598 gcatttccc 24858590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 453 - 516
Target Start/End: Original strand, 42563403 - 42563466
Alignment:
Q  453 ttttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    |||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||    
T  42563403 ttttaaagtttcaatgcattgaatgcaccatttctaagataaaatttcttccttagtcttctta 42563466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 525
Target Start/End: Complemental strand, 38868922 - 38868829
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 525  Q
    ||||| |||||||||||||| ||||||| ||||||||  ||||||||| |||| ||||||||| ||||| |||||||  |||||| ||||||||    
T  38868922 ttttatgtagaaaaagttactttttaaactttcaatgtgttgaatgcatcattcccaagacaaaatttcctctttagatttcttaacaagtgcc 38868829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 551
Target Start/End: Original strand, 3167190 - 3167311
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    |||||||||||||||| ||||  ||| |||||||  |||||| ||||||||||||| ||| | || ||||||| ||||  |||||||  || |||| | |    
T  3167190 aattttaagtagaaaaggttatttttcaaagttttcatgcatcgaatgcaccattttcaaaataaaatttcttttttaaacttcttaaaaaatgccctaa 3167289  T
Q  530 gggcacttgttaacatttccca 551  Q
    ||||| ||||||||||||||||    
T  3167290 gggcatttgttaacatttccca 3167311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 523
Target Start/End: Original strand, 8839705 - 8839797
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttctt-ctttagtcttcttatcaagtg 523  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||||||  |||| |||||||| |||||||  ||||| ||||||| ||||||    
T  8839705 aattttaagtagaaaa-gttat-ttttaaagtttcaatgcattgaatgcattattttcaagacaaaatttcttattttagacttcttaacaagtg 8839797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 3784132 - 3784073
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaa 489  Q
    ||||||||||||||||| ||  |||||||||||| ||||||||||||| | |||||||||    
T  3784132 aattttaagtagaaaaaatttgattttaaagttttaatgcattgaatgtatcatttccaa 3784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 485
Target Start/End: Original strand, 36832845 - 36832899
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccattt 485  Q
    ||||||| |||||||||||| |||||| ||||||||||| |||||||||| |||||    
T  36832845 aattttatgtagaaaaagtt-catttttaagtttcaatgtattgaatgcatcattt 36832899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 550
Target Start/End: Original strand, 4197229 - 4197350
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaaca-tttcttctttagtcttcttatcaagtgccttg 528  Q
    ||||||| |||||||||||||  |||| ||||||||| |  |||||| ||| |||||||||| || | ||||||||||   ||||| | ||||| ||       
T  4197229 aattttatgtagaaaaagttatttttttaagtttcaaggtgttgaatacacaatttccaagaaaaaagtttcttcttttaacttctaaacaagttcccca 4197328  T
Q  529 agggcacttgttaacatttccc 550  Q
    ||||||||||||| ||||||||    
T  4197329 agggcacttgttaccatttccc 4197350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 547
Target Start/End: Original strand, 26009789 - 26009825
Alignment:
Q  511 ttcttatcaagtgccttgagggcacttgttaacattt 547  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  26009789 ttcttatcaagtgtcttaagggcacttgttaacattt 26009825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 430 - 547
Target Start/End: Original strand, 25129876 - 25129993
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  25129876 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagataacatttcttctttagtcttcttatcaagtgctttga 25129975  T
Q  530 gggcacttgttaacattt 547  Q
    ||||||||||||||||||    
T  25129976 gggcacttgttaacattt 25129993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 430 - 550
Target Start/End: Original strand, 8472376 - 8472492
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||    
T  8472376 aattttaagtagaaaaagttacat---aaagtttcaatgctttgaatgcaccatttccaagacaacatttcttcattagtctttttat-aagtaccttga 8472471  T
Q  530 gggcacttgttaacatttccc 550  Q
    |||||||||||||||||||||    
T  8472472 gggcacttgttaacatttccc 8472492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 40682513 - 40682374
Alignment:
Q  67 agtttgatgagctgctggaggaaaaactggtttcactggtattat-ctataatgcttccatcaatctctgtgtctgacggccgtatggacaattttcctt 165  Q
    |||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||||||| |   ||| ||||||  ||||||||||||||||||    
T  40682513 agtttgatgagctgctggaggaaaaactggtttcactggtatcatccaataacgcttccatcaatatacatgtttgacggttgtatggacaattttcctt 40682414  T
Q  166 tggcaacggcataaactgtacaaaatcttggagtgcatac 205  Q
     |  |||  |||||||||||||| ||||||||||||||||    
T  40682413 ggaaaacaacataaactgtacaatatcttggagtgcatac 40682374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 525
Target Start/End: Original strand, 36995264 - 36995357
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 525  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |||| ||||||||||| | ||||||| ||||||||    
T  36995264 ttttaagtagaaaaagttactttataaaatttcaatgcattgaatgcaccatttccaaaacaaaatttcttctttggacttcttaacaagtgcc 36995357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 449 - 525
Target Start/End: Complemental strand, 15646986 - 15646910
Alignment:
Q  449 tacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 525  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| ||| ||||||||    
T  15646986 tacattttaaagtttcaatgcattcaatgcaccatttccaagacaaaatttcttctttaatctttttaacaagtgcc 15646910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 1609800 - 1609705
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcct 526  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||| | || ||||||| |||||||| |||||||||    
T  1609800 aattttaagtagaaaaaattacattttaa-gtttcaatacattgaatgcatcattttcaagacaaaagttgttctttaatcttcttaacaagtgcct 1609705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 508
Target Start/End: Complemental strand, 2748640 - 2748562
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttag 508  Q
    ||||||||||| ||||| |||| ||| |||||||||||||||||||| ||||||||  ||||||| |||||||||||||    
T  2748640 aattttaagtaaaaaaaattacttttcaaagtttcaatgcattgaattcaccatttttaagacaaaatttcttctttag 2748562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 550
Target Start/End: Original strand, 48902879 - 48902997
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagg 531  Q
    ||||| |||| ||||||||  |||||||||| |||||  |||||| ||||||| | |||| || ||||||||||| | ||||||| |||||||| | |||    
T  48902879 ttttatgtagcaaaagttattttttaaagttccaatgttttgaatacaccattcctaagataaaatttcttcttttgacttcttagcaagtgcccttagg 48902978  T
Q  532 gcacttgttaacatttccc 550  Q
    |||| ||||| ||||||||    
T  48902979 gcacctgttagcatttccc 48902997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 548
Target Start/End: Original strand, 49899079 - 49899179
Alignment:
Q  448 ttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacattt 547  Q
    |||| ||| ||| ||||||||  ||||||||| ||||||||| ||||  ||||| |||||| ||| ||| |||||||||||||||||||| ||| |||||    
T  49899079 ttacttttcaaaatttcaatgtgttgaatgcatcatttccaaaacaaagtttctgctttagactttttaacaagtgccttgagggcacttattagcattt 49899178  T
Q  548 c 548  Q
    |    
T  49899179 c 49899179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 502
Target Start/End: Original strand, 37494043 - 37494106
Alignment:
Q  439 tagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttctt 502  Q
    |||||||||| |||||||||||||| |||||||| ||||||| ||||  ||||||| |||||||    
T  37494043 tagaaaaagtcacattttaaagttttaatgcattaaatgcactatttttaagacaaaatttctt 37494106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 547
Target Start/End: Complemental strand, 45584394 - 45584289
Alignment:
Q  442 aaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgtta 541  Q
    |||||||||  |||||||||| ||||||||||||| ||  |||| ||||| |   |||||||||||| ||||||| |||||||  ||| | |||||||||    
T  45584394 aaaaagttattttttaaagttccaatgcattgaatacataattttcaagatatagtttcttctttagacttcttaacaagtgcactgatgacacttgtta 45584295  T
Q  542 acattt 547  Q
     |||||    
T  45584294 tcattt 45584289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 553
Target Start/End: Complemental strand, 18407535 - 18407416
Alignment:
Q  433 tttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgaggg 532  Q
    |||| |||||||||  ||| ||||||||||||||| ||||||||| | ||||  ||| ||||  |||||| ||||  ||||| | ||||||| |||||||    
T  18407535 tttatgtagaaaaaaatactttttaaagtttcaatacattgaatgtatcattctcaaaacaaagtttctt-tttaaacttctaaacaagtgctttgaggg 18407437  T
Q  533 cacttgttaacatttcccaaa 553  Q
     ||||| || |||||||||||    
T  18407436 tacttgctagcatttcccaaa 18407416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 516
Target Start/End: Original strand, 34620650 - 34620734
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    ||||| ||||||||| |||| |||| |||||||||||  ||||||||| || | ||||||| |  |||||||||||| |||||||    
T  34620650 ttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatcccaagacgaactttcttctttaggcttctta 34620734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 550
Target Start/End: Complemental strand, 44698113 - 44697993
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||| || ||||||||||| |||||| ||||||||   |||||| ||| | |||||||| || | |||  |||||  ||| |||||||||||| | |    
T  44698113 aattttatgttgaaaaagttactttttaatgtttcaatatgttgaatacacaacttccaagataaaacttccactttaaacttattatcaagtgccctaa 44698014  T
Q  530 gggcacttgttaacatttccc 550  Q
    ||||||||||||  |||||||    
T  44698013 gggcacttgttagtatttccc 44697993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 552
Target Start/End: Complemental strand, 1411745 - 1411641
Alignment:
Q  448 ttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacattt 547  Q
    |||| ||||||| ||||||||  |||||| || |||| | |||| || ||||| | ||||  ||||||| |||||  ||  |||||||||||||||||||    
T  1411745 ttactttttaaactttcaatgtgttgaatacatcattcctaagataaaatttcctttttaaacttcttaacaagtatctcaagggcacttgttaacattt 1411646  T
Q  548 cccaa 552  Q
    |||||    
T  1411645 cccaa 1411641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 525
Target Start/End: Complemental strand, 52698484 - 52698420
Alignment:
Q  461 tttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 525  Q
    ||||||||  |||||| ||| ||| |||||| || |||||| |||||| ||||||||||||||||    
T  52698484 tttcaatgtgttgaatacacaattcccaagaaaaaatttctactttagacttcttatcaagtgcc 52698420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 430 - 550
Target Start/End: Complemental strand, 15965881 - 15965761
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  15965881 aattttaagtagaaaaagttacattttaaaatttaaatgcattgaatgcaccatttctaagacaacatttcttctttagtcttcttatcaagtatcttga 15965782  T
Q  530 gggcacttgttaacatttccc 550  Q
    ||| | |||||||||||||||    
T  15965781 gggtatttgttaacatttccc 15965761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 430 - 485
Target Start/End: Complemental strand, 1352424 - 1352369
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccattt 485  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  1352424 aattttaagtaaaaaaagttacattttaaagtttcaatgcagcgaatgcaccattt 1352369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 431 - 507
Target Start/End: Complemental strand, 19367056 - 19366981
Alignment:
Q  431 attttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttcttta 507  Q
    ||||||||||||||| ||||| |||||||||||||||  ||||||||| | |||| |||||||| ||||||||||||    
T  19367056 attttaagtagaaaa-gttactttttaaagtttcaatttattgaatgctcaattttcaagacaaaatttcttcttta 19366981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 509
Target Start/End: Complemental strand, 1355448 - 1355370
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagt 509  Q
    |||||||| ||||| || |||||||| |||||||||||||| | |||||||||||| |||||||| | ||||||||||||    
T  1355448 aattttaaatagaagaaattacatttaaaagtttcaatgcagtaaatgcaccattttcaagacaa-aattcttctttagt 1355370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 537
Target Start/End: Complemental strand, 4613129 - 4613063
Alignment:
Q  471 ttgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcactt 537  Q
    ||||||||||||||||||||||||  |||||  ||||| |||||||||||||||| | |||||||||    
T  4613129 ttgaatgcaccatttccaagacaaagtttctcttttagacttcttatcaagtgccctaagggcactt 4613063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 549
Target Start/End: Complemental strand, 1863184 - 1863067
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagg 531  Q
    ||||| ||||| |||||||| ||||||| ||||||||  |||||| || ||||||||||| || |||| || ||||  ||||||| |||||||    |||    
T  1863184 ttttatgtagataaagttactttttaaactttcaatgtgttgaatacatcatttccaagataaaatttattttttaaacttcttaacaagtgcgccaagg 1863085  T
Q  532 gcacttgttaacatttcc 549  Q
     |||||||||||||||||    
T  1863084 acacttgttaacatttcc 1863067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 9515583 - 9515542
Alignment:
Q  453 ttttaaagtttcaatgcattgaatgcaccatttccaagacaa 494  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  9515583 ttttaaagtttcaatgcattgaatgcataatttccaagacaa 9515542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 430 - 507
Target Start/End: Complemental strand, 38370608 - 38370531
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttcttta 507  Q
    ||||||| ||||||||| |||| ||| |||  || |||||||| |||||| ||||| |||||||| ||||||||||||    
T  38370608 aattttacgtagaaaaatttacttttaaaaacttaaatgcattcaatgcatcattttcaagacaaaatttcttcttta 38370531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 550
Target Start/End: Original strand, 41174332 - 41174452
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||| || || |||||||| ||||||  ||||||||  || ||||||| | |||||||| || | |||  |||||  |||||||||||||||  | |    
T  41174332 aattttatgttgacaaagttactttttaatatttcaatgtgttaaatgcacaacttccaagataaaacttccactttaagcttcttatcaagtgctctta 41174431  T
Q  530 gggcacttgttaacatttccc 550  Q
    | |||||||||||||||||||    
T  41174432 gagcacttgttaacatttccc 41174452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 547
Target Start/End: Complemental strand, 19608856 - 19608742
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagg 531  Q
    ||||| |||||||||||||| |||||| |||||||||  ||||||  || | |||||||| ||  |||| | |||   |||||||| |||||||||||      
T  19608856 ttttatgtagaaaaagttactttttaatgtttcaatgtgttgaatagacaaattccaagataaagtttcctttttgaacttcttattaagtgccttga-a 19608758  T
Q  532 gcacttgttaacattt 547  Q
    ||||||||||||||||    
T  19608757 gcacttgttaacattt 19608742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 494
Target Start/End: Complemental strand, 4462641 - 4462579
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaa 494  Q
    ||||| |||||||| ||||| ||||||| |||||||   ||||||||| ||||||||||||||    
T  4462641 ttttatgtagaaaatgttactttttaaactttcaatatcttgaatgcatcatttccaagacaa 4462579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 36302693 - 36302643
Alignment:
Q  435 taagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccattt 485  Q
    ||||||| |||| |||  |||||||||||||||||||||||||||| ||||    
T  36302693 taagtaggaaaaattattttttaaagtttcaatgcattgaatgcactattt 36302643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 563
Target Start/End: Original strand, 31559197 - 31559237
Alignment:
Q  523 gccttgagggcacttgttaacatttcccaaaaagaaattat 563  Q
    |||||||||||||  |||||||||||||||||| |||||||    
T  31559197 gccttgagggcacaagttaacatttcccaaaaaaaaattat 31559237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 430 - 549
Target Start/End: Original strand, 41252775 - 41252896
Alignment:
Q  430 aattttaagtagaaaaag-ttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttg 528  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41252775 aattttaagtagaaaaaaattacattttaaagtttcaatgcattgaatgcatcatttccaagacaacatatcttctttagtcttcttatcaagtgccttg 41252874  T
Q  529 -agggcacttgttaacatttcc 549  Q
     | |||||||||||||||||||    
T  41252875 aaaggcacttgttaacatttcc 41252896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 430 - 547
Target Start/End: Original strand, 19002777 - 19002894
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||| | | |    
T  19002777 aattttaagtagaaaaatttactttttaaaatttcaatgcattgaatgcaccatttccaagacaaagtttcttctttagtctttttaacaagtgtcctta 19002876  T
Q  530 gggcacttgttaacattt 547  Q
    |||||||||||| |||||    
T  19002877 gggcacttgttagcattt 19002894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 430 - 521
Target Start/End: Original strand, 32838660 - 32838751
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaag 521  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||| ||||    
T  32838660 aattttaaatagaaaatgttacattttaaagtttcaatgcattgaatgcatcatttccaagacaaaatttcttctttaattttcttaacaag 32838751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 33847546 - 33847482
Alignment:
Q  458 aagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagt 522  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33847546 aagtttcaatgcattgaatgcatcatttccaagacaacatttcttctttagtcttcttatcaagt 33847482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 521
Target Start/End: Original strand, 752182 - 752271
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaag 521  Q
    ||||| ||||||||| |||| |||| |||||||||||  ||||||||| || | ||||||||| ||||||||||||| ||||||| ||||    
T  752182 ttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatcccaagacaaaatttcttctttagacttcttaacaag 752271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 553
Target Start/End: Complemental strand, 38788743 - 38788704
Alignment:
Q  514 ttatcaagtgccttgagggcacttgttaacatttcccaaa 553  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  38788743 ttatcaagtgccttaagggcacttgttaacatttcccaaa 38788704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 508
Target Start/End: Original strand, 42887029 - 42887110
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcacca---tttccaagacaacatttcttctttag 508  Q
    ||||||||||  ||||| |||| ||||||||||| ||| ||| |||| |||||   ||||||||||||||||||||||||||    
T  42887029 aattttaagttaaaaaaattactttttaaagtttaaattcatcgaatacaccactgtttccaagacaacatttcttctttag 42887110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 508
Target Start/End: Original strand, 38042465 - 38042543
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttag 508  Q
    ||||||||||| |||| ||||| |||| ||||||||||||| ||||||||| ||||| || |||| ||| ||| |||||    
T  38042465 aattttaagtacaaaaggttacttttttaagtttcaatgcaatgaatgcacaatttctaatacaaaattccttttttag 38042543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 1388503 - 1388572
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacattt 499  Q
    |||||||| || |||| ||||| |||||| |||| ||||||||||||| | ||||| |||||||||||||    
T  1388503 aattttaaataaaaaaggttactttttaatgttttaatgcattgaatgtatcattttcaagacaacattt 1388572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 541
Target Start/End: Original strand, 11074541 - 11074642
Alignment:
Q  440 agaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgt 539  Q
    |||||||||| | |||| | |||||||||  |||||| ||| | | |||||| || |||||| |||||  |||||||||||||||  | |||||||||||    
T  11074541 agaaaaagttgcttttttatgtttcaatgtgttgaatacacaaatcccaagaaaaaatttctactttaaacttcttatcaagtgctctaagggcacttgt 11074640  T
Q  540 ta 541  Q
    ||    
T  11074641 ta 11074642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 545
Target Start/End: Original strand, 1900596 - 1900668
Alignment:
Q  473 gaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacat 545  Q
    |||||||| ||||| |||| || ||| || |||||  |||||||||||||| | | |||||||||||||||||    
T  1900596 gaatgcacaatttctaagataaaattactactttaagcttcttatcaagtgtccttagggcacttgttaacat 1900668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 430 - 542
Target Start/End: Original strand, 38912918 - 38913030
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  38912918 aattttaaatagaaaaagttgtattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttattctttaatcttcttatcaagtgtcttga 38913017  T
Q  530 gggcacttgttaa 542  Q
    |||||||||||||    
T  38913018 gggcacttgttaa 38913030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 442 - 549
Target Start/End: Complemental strand, 5909149 - 5909042
Alignment:
Q  442 aaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgtta 541  Q
    |||||||||  ||| |||||||||| |||||||||||| || |||||||||||  |||||||||||| ||||||| |||||| ||||| |||| ||||||    
T  5909149 aaaaagttatttttcaaagtttcaaggcattgaatgcatcacttccaagacaaagtttcttctttagacttcttaacaagtgtcttgaaggcatttgtta 5909050  T
Q  542 acatttcc 549  Q
     |||||||    
T  5909049 gcatttcc 5909042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 7728605 - 7728691
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    |||||||| || |||||||||||||||||| |||||||| ||| ||||||||||||||||||||| | || || |||| ||||||||    
T  7728605 aattttaattataaaaagttacattttaaaatttcaatgaattaaatgcaccatttccaagacaaaaattattttttaatcttctta 7728691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 431 - 516
Target Start/End: Original strand, 21275642 - 21275727
Alignment:
Q  431 attttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    ||||||||||||||||||| | ||||||| ||| ||||||||||||||||| |||| |||||||  |||||||||||  |||||||    
T  21275642 attttaagtagaaaaagttgctttttaaaattttaatgcattgaatgcaccttttctaagacaaactttcttctttaagcttctta 21275727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 434 - 516
Target Start/End: Original strand, 23828919 - 23829001
Alignment:
Q  434 ttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    |||||||||||| ||||| || |||| ||||||| ||||||||||| |||||  ||||||| | |||||||||||||||||||    
T  23828919 ttaagtagaaaatgttactttctaaaatttcaatacattgaatgcatcatttttaagacaaaacttcttctttagtcttctta 23829001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 34963398 - 34963484
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    ||||||||||||||||||| || ||| |||||||  |||||||||||||||||||||||||| || |||| || ||||  |||||||    
T  34963398 aattttaagtagaaaaagtcacttttcaaagttttcatgcattgaatgcaccatttccaagataaaatttattttttaaacttctta 34963484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 46683101 - 46683051
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcac 480  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  46683101 aattttaagtataaaaagttacattttaaagtttcaatgcattgagtgcac 46683051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 550
Target Start/End: Original strand, 28198044 - 28198161
Alignment:
Q  433 tttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgaggg 532  Q
    |||| |||||||||||| | |||| |||||||||||  |||||| ||| |||||||||| ||  |||||||||| | ||||| | |||||||| |  |||    
T  28198044 tttatgtagaaaaagtttctttttgaagtttcaatgtcttgaatacacaatttccaagaaaaagtttcttctttggacttctaaacaagtgcccttgggg 28198143  T
Q  533 cacttgttaacatttccc 550  Q
    ||||||||| ||||||||    
T  28198144 cacttgttagcatttccc 28198161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 25874372 - 25874458
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||  |||| |||  ||| ||||||||||| || ||||||    
T  25874372 aattttaagtagaacatgttacattttaaagtttcaatatattgaatgcattattttcaaatcaaaatttcttctttggttttctta 25874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 508
Target Start/End: Complemental strand, 38663719 - 38663641
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttag 508  Q
    |||||||| || |||||||||| |||||||||||||||||||| ||| ||| ||||  || |||| |||||||||||||    
T  38663719 aattttaaatataaaaagttactttttaaagtttcaatgcattaaatacacaatttttaaaacaaaatttcttctttag 38663641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 46096817 - 46096747
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttc 500  Q
    |||||||| || ||||| |||| ||||||| |||||||||| ||||||||||||||| |||| || |||||    
T  46096817 aattttaaataaaaaaaattactttttaaaatttcaatgcactgaatgcaccatttctaagataatatttc 46096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 36595419 - 36595340
Alignment:
Q  471 ttgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacatttccc 550  Q
    ||||||||| |||||||||||||| ||||| ||||||| ||||| |  ||||||| | ||| ||| ||||| ||||||||    
T  36595419 ttgaatgcatcatttccaagacaaaatttcctctttagacttctaaagaagtgccctaaggccacatgttagcatttccc 36595340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 512
Target Start/End: Complemental strand, 16100003 - 16099965
Alignment:
Q  474 aatgcaccatttccaagacaacatttcttctttagtctt 512  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  16100003 aatgcaccatttccaacacaaaatttcttctttagtctt 16099965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 507
Target Start/End: Original strand, 18662356 - 18662406
Alignment:
Q  457 aaagtttcaatgcattgaatgcaccatttccaagacaacatttcttcttta 507  Q
    ||||||||||| ||||||||||| ||||| |||||||| |||| |||||||    
T  18662356 aaagtttcaatacattgaatgcatcattttcaagacaaaatttattcttta 18662406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 472
Target Start/End: Original strand, 29654367 - 29654409
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcatt 472  Q
    |||||||| |||||||||||||||||| || ||||||||||||    
T  29654367 aattttaaatagaaaaagttacatttttaaatttcaatgcatt 29654409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 24463757 - 24463822
Alignment:
Q  442 aaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttcttta 507  Q
    ||||| |||| ||| ||| ||| ||| |||||||||||| ||||||||||||| ||||||| ||||    
T  24463757 aaaaaattacttttcaaaatttgaatacattgaatgcactatttccaagacaaaatttctttttta 24463822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 494
Target Start/End: Complemental strand, 5000405 - 5000353
Alignment:
Q  442 aaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaa 494  Q
    |||| ||||| ||||||| ||||||||  ||||||||| ||||||||||||||    
T  5000405 aaaatgttactttttaaactttcaatgtcttgaatgcatcatttccaagacaa 5000353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 40037786 - 40037726
Alignment:
Q  452 attttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtctt 512  Q
    |||||||||||||||||||||||||  | |||||  |||| || ||||||| |||||||||    
T  40037786 attttaaagtttcaatgcattgaatatatcatttttaagataaaatttcttttttagtctt 40037726  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 527
Target Start/End: Original strand, 46152270 - 46152346
Alignment:
Q  451 cattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcctt 527  Q
    |||||| || ||||||||  ||||||||| || | |||||| || ||||||||||||| ||||||| |||| |||||    
T  46152270 cattttcaaatttcaatgtgttgaatgcatcaatcccaagaaaaaatttcttctttaggcttcttaacaagggcctt 46152346  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 448 - 550
Target Start/End: Complemental strand, 1147896 - 1147800
Alignment:
Q  448 ttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacattt 547  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||      |||||| ||||||||||||||||||| | |||||||||||||||    
T  1147896 ttacattttaaagtttcaatgcattgaatgcaccatttccaatacaacat------tttagttttcttatcaagtgccttgatgacacttgttaacattt 1147803  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 537
Target Start/End: Original strand, 8082495 - 8082592
Alignment:
Q  440 agaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcactt 537  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||| |||||||  ||||| |||||| ||||||    
T  8082495 agaaaaaattactttttaaagtttcaatgcatttaatgcaccattttcaagacaaaatttcttatttagacttcttaagaagtgtcttgagagcactt 8082592  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 33605150 - 33605055
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 525  Q
    ||||| |||| |||||||||| |||||||||||| ||||  || |||| || | ||  ||||||| | ||||||||||||||||||| ||||||||    
T  33605150 aatttaaagttgaaaaagttatattttaaagttttaatgatttcaatgtacaaattttaagacaaaaattcttctttagtcttcttaacaagtgcc 33605055  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 549
Target Start/End: Original strand, 24396824 - 24396920
Alignment:
Q  453 ttttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacatttcc 549  Q
    |||||| |||||||||  |||||| ||| | ||| |||| || ||||||  |||   ||| |||||||||||| | |||||||||||||||||||||    
T  24396824 ttttaatgtttcaatgttttgaatacacgaattctaagataaaatttctattttcaactttttatcaagtgccctaagggcacttgttaacatttcc 24396920  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 31597553 - 31597621
Alignment:
Q  432 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttc 500  Q
    ||||| |||||||||||||| |||||| |||| ||||  |||||||||| | || |||||||| |||||    
T  31597553 ttttatgtagaaaaagttactttttaatgttttaatgtgttgaatgcacaaatttcaagacaaaatttc 31597621  T

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Target: scaffold0016 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 430 - 512
Target Start/End: Original strand, 79991 - 80073
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtctt 512  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  79991 aattttatgtagaaaaagttatattttaaagtttcaatacattgagtgcaccatttccaatacaacatttcttctttagtctt 80073  T

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Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 547
Target Start/End: Original strand, 80096 - 80144
Alignment:
Q  499 tcttctttagtcttcttatcaagtgccttgagggcacttgttaacattt 547  Q
    ||||||||||||||||||||| ||||||||||  || ||||||||||||    
T  80096 tcttctttagtcttcttatcatgtgccttgagcacatttgttaacattt 80144  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 42631774 - 42631679
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 525  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||| ||||||| | ||||||    
T  42631774 aattttaagtagaaaaaattaccttttaaagttttaatgcattgaatgcaccattttcaagacaaaatttattctttagacttcttaactagtgcc 42631679  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 44814142 - 44814058
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    |||||||||||||||  ||| ||||||||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||    
T  44814142 aattttaagtagaaagggttgcattttaaagtttcaatg--ttgaatgcaccattttcaagacaaaatttcttctttagtcttctta 44814058  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 550
Target Start/End: Complemental strand, 32615895 - 32615798
Alignment:
Q  453 ttttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacatttccc 550  Q
    |||||| |||||||||  |||||| ||| | |||||||| || |||||| |||||  |||||||||||||||| | ||||||||||||||||||||||    
T  32615895 ttttaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttaaacttcttatcaagtgccctaagggcacttgttaacatttccc 32615798  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 550
Target Start/End: Original strand, 34496912 - 34497032
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttga 529  Q
    ||||||||||| ||||  |||| || ||||||||||||||||||||| ||  |||| |||||||| ||||||||||||  ||||||| ||| |||| | |    
T  34496912 aattttaagtataaaatattactttataaagtttcaatgcattgaatacataatttacaagacaaaatttcttctttaaacttcttaacaattgccctta 34497011  T
Q  530 gggcacttgttaacatttccc 550  Q
     | | ||||||||||||||||    
T  34497012 agacgcttgttaacatttccc 34497032  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 440 - 525
Target Start/End: Original strand, 14955259 - 14955344
Alignment:
Q  440 agaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 525  Q
    |||||||||||| ||||||| ||||||||  ||||||||| ||||||||||| || | ||| ||||||   |||||| ||||||||    
T  14955259 agaaaaagttactttttaaactttcaatgtgttgaatgcatcatttccaagataaaacttcctctttaaaattcttaacaagtgcc 14955344  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 28827656 - 28827607
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgca 479  Q
    |||||||| ||||||||||| | ||| ||| |||||||||||||||||||    
T  28827656 aattttaaatagaaaaagttgcttttcaaaatttcaatgcattgaatgca 28827607  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 475
Target Start/End: Original strand, 45197812 - 45197845
Alignment:
Q  442 aaaaagttacattttaaagtttcaatgcattgaa 475  Q
    |||||||||| |||||||||||||||||||||||    
T  45197812 aaaaagttactttttaaagtttcaatgcattgaa 45197845  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 485
Target Start/End: Original strand, 5323633 - 5323665
Alignment:
Q  453 ttttaaagtttcaatgcattgaatgcaccattt 485  Q
    |||||||||||||||| ||||||||||||||||    
T  5323633 ttttaaagtttcaatgtattgaatgcaccattt 5323665  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 550
Target Start/End: Complemental strand, 20305785 - 20305673
Alignment:
Q  438 gtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcactt 537  Q
    ||||||||| |||| ||||||| ||||||||   ||| | |||| || |||||| || | ||| | ||||  |||||||||||||||| | | |||||||    
T  20305785 gtagaaaaacttactttttaaactttcaatgttatgagtacacccttcccaagataaaacttcctttttaaacttcttatcaagtgccgttaaggcactt 20305686  T
Q  538 gttaacatttccc 550  Q
    |||| ||||||||    
T  20305685 gttagcatttccc 20305673  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 550
Target Start/End: Complemental strand, 21092418 - 21092306
Alignment:
Q  438 gtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcactt 537  Q
    ||||||||| |||| ||||||| ||||||||   ||| | |||| || |||||| || | ||| | ||||  |||||||||||||||| | | |||||||    
T  21092418 gtagaaaaacttactttttaaactttcaatgttatgagtacacccttcccaagataaaacttcctttttaaacttcttatcaagtgccgttaaggcactt 21092319  T
Q  538 gttaacatttccc 550  Q
    |||| ||||||||    
T  21092318 gttagcatttccc 21092306  T

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Target: scaffold0236 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 20238 - 20152
Alignment:
Q  430 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 516  Q
    |||||||||||||||||||||  |||||||||||||||  |||||||| | |||||||||||||| ||||||||| |||||||||||    
T  20238 aattttaagtagaaaaagttattttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 20152  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 29751 - 29840
Alignment:
Q  460 gtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgccttgagggcacttgttaacatttcc 549  Q
    |||||||||  |||||| ||| | |||||||| || |||||| ||||   ||| |||||||||||| | ||||||||| |||||||||||    
T  29751 gtttcaatgtgttgaatacacgaattccaagataaaatttctactttcaactttttatcaagtgccctaagggcacttattaacatttcc 29840  T

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