View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4422_low_5 (Length: 567)
Name: NF4422_low_5
Description: NF4422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4422_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Original strand, 15376875 - 15377416
Alignment:
| Q |
14 |
tcatcaacaacccacactctctcccacttcacactctcaccaccatcaacgctatccactccggcggcgacttctccgatcaacctccggcgatttctcc |
113 |
Q |
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| T |
15376875 |
tcatcaacaacccacactctctcccacttcacactctcaccaccatcaacgctatcctctccggcggcaacttctccgatcaacctccggcgacttctcc |
15376974 |
T |
|
| Q |
114 |
gatcatcccaaaaccatgacaacaacagaatgaatct-------tctcgatgtcgatttcatactccaactttttcaccgactccgacctcttatgcggc |
206 |
Q |
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| T |
15376975 |
gatcatcccaaaaccatgataacaccggaatgaatctcatccactcccgatgtcgatttcatactccaacttcttcaccgactccgacctcttatgcggc |
15377074 |
T |
|
| Q |
207 |
gaggaaacctccagcatcttatcgtcagattcgccgacggaatccttctccgatggtgaatcttatccgccgccggaggatgagttcatcgccggattaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15377075 |
gaggaaacctccagcatcttatcgtcagattcgccgacggaatccttctccgatggtgaatcttatccgccgccggaggatgagttcatcgccggattaa |
15377174 |
T |
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| Q |
307 |
tcgaagacgaacgtaaattcgtcatcggattcgattatttcgtgaagatgaaatctagctcgttcgattccgatgctagagatgaatccattcgatggat |
406 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15377175 |
tcgaagacgaaggtaaattcgtcatcggattcgattatttcgtgaagatgaaatctagctcgttcgattccgatgctagagatgaatccattcgatggat |
15377274 |
T |
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| Q |
407 |
cctaaaggtaaaatctcgatacatccataacgaaccagacgatgctaaaatgcaccgtcgcagaaaaacggttacggttgatgtatattattgtttttag |
506 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15377275 |
cctaaaggtaaaatctcgattcatccataacgaactagacgatgctaaaatgcaccgtcgcagaaaaacggttacggttgatgtatattattgtttttag |
15377374 |
T |
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| Q |
507 |
tttctgatgtgaatcggtttgcgatctggtgtgtgcaggtgc |
548 |
Q |
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| T |
15377375 |
tttctgatgtgaatcggtttgcgatctggtgtgtgcaggtgc |
15377416 |
T |
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