View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423-Insertion-3 (Length: 588)
Name: NF4423-Insertion-3
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423-Insertion-3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Complemental strand, 45694323 - 45693732
Alignment:
| Q |
8 |
acgggttcgaagaaaaatcgttcaaccgaagtgcacaatctatctgaaagggtgagtaagagtaagatcatcttccatttgtgccttttaagaaaagtag |
107 |
Q |
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| T |
45694323 |
acgggctcgaagaaaaatcgttcaaccgaagtgcacaatctatctgaaagggtgagtaagagtaagatcatcttccatttgtgccttttaagaaaagtag |
45694224 |
T |
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| Q |
108 |
aaataacaaactttccatcttaagtgtatgtttagcaatattgcttctgatttatccgattcactcgtgcagagacgaagagacaggatcaatgagagga |
207 |
Q |
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| T |
45694223 |
aaataacaaactttccatcttaagtgtatgtttagcaatattgcttctgatttatccgattcactcgtgcagagacgaagagacaggatcaatgagagga |
45694124 |
T |
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| Q |
208 |
tgcgtgcattgcaagaactcataccgaattgcaacaaggttgaccnnnnnnnncttcaggttctctaagtacatctgagaaaccttatatatcaatatag |
307 |
Q |
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| T |
45694123 |
tgcgtgcattgcaagaactcataccgaattgcaacaaggttgaccttttttttcttcaggttctctaagtacatctgagaaaccttatatatcaatatag |
45694024 |
T |
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| Q |
308 |
aatgttgattctcacttggtatttaagattcgaacggttatattttagtttgttttggtaaaatttggaatttttgtatc-aatgatattggaatatgtg |
406 |
Q |
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| T |
45694023 |
aatgttgattttcacttggtatttaagattcaaacggttatattttagtttgttttggtaaaatttggaatttttgtatcaaatgatattggaatatgtg |
45693924 |
T |
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| Q |
407 |
aatactgaagctcaagttttgtttggatggtttcaatcctcaatttgagtatg-aatatatgtcccatt--cacaaacaaaatagcag-agttc-attc- |
500 |
Q |
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| T |
45693923 |
aatactgaagctcaagttttgtttggatggtttcaatcctcaatttgagtatgaaatatatgtcccattcccacaacaaaaatagcagaagttcaattca |
45693824 |
T |
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| Q |
501 |
aatttcttt-acat-agctattaaaatgc-tgatatatatagatatcaaagagtcacatcatct-actaaaataattttcaccaagttttaa |
588 |
Q |
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| T |
45693823 |
aatttctttaacataagctattaaaatgcttgatatatatagatatcaaagagtcacatcatctaactaaaatatttttcaccaagttttaa |
45693732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 31295595 - 31295666
Alignment:
| Q |
177 |
cagagacgaagagacaggatcaatgagaggatgcgtgcattgcaagaactcataccgaattgcaacaaggtt |
248 |
Q |
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| T |
31295595 |
cagaggcgaagagacaggataaatgagaagatgtgtgcattgcaagaactcatacctaattgcaataaggtt |
31295666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 37935221 - 37935292
Alignment:
| Q |
177 |
cagagacgaagagacaggatcaatgagaggatgcgtgcattgcaagaactcataccgaattgcaacaaggtt |
248 |
Q |
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| T |
37935221 |
cagaggcgaagagacaggataaatgagaagatgcgtgcattgcaagaactcatacctaattgcaataaggtt |
37935292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 37935089 - 37935121
Alignment:
| Q |
35 |
gaagtgcacaatctatctgaaagggtgagtaag |
67 |
Q |
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| T |
37935089 |
gaagtgcataatctatctgaaagggtgagtaag |
37935121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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