View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423-Insertion-4 (Length: 490)
Name: NF4423-Insertion-4
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423-Insertion-4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 18116515 - 18116997
Alignment:
| Q |
8 |
ttaagaatctaacctcttttttgttgtcaacttgtaatcatatttagacatccactattactaatactttttagtacggactatatctacacgaaattaa |
107 |
Q |
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| T |
18116515 |
ttaagaatctaacctcttttttgttgtcaacttgttatcatatttagacatccactattactaatgctttttagtacggactatatctacgcgaaattaa |
18116614 |
T |
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| Q |
108 |
ttgtttttgtgagatttatctatgattgtttccataatttcttatttctcttccattttttcatgttattagtttatctctgaaacttcattgtgtgtga |
207 |
Q |
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| T |
18116615 |
ttgtttttgtgagatttatctatgattgtttccataatttcttatttctcttccattttttcatgttattagtttatctctgaaacttcattgtgtgtga |
18116714 |
T |
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| Q |
208 |
aaaaattcatttcatatatcacggctgttgctcattaatgtggcttgttcagccactgattatattaccactcttgcgtttcacttttcctcaatattta |
307 |
Q |
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| T |
18116715 |
aaaaattcatttcatatatcacggctgttgctcattaatgtggcttgttcagccactgattatattagcactcttgcgtttcacttttcctcaatattta |
18116814 |
T |
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| Q |
308 |
tgctttatttacaatgtaaaaaggccttctccttatctgtgatcttatacaattttaggatcattgtaccgttgggaaatgcctgcataatttacctcgt |
407 |
Q |
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| T |
18116815 |
tgctttatttacaatgtaaaaaggccttctccttatctgtgatcttatacaattttaggatcattgtaccgttgggaaatgcctgcataatttacctcgt |
18116914 |
T |
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| Q |
408 |
ctgtgaacttaaaatcatcgagtttgtattttataccctgatgctgcctcttttctgcttatttttctgaatctgttctgcta |
490 |
Q |
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| T |
18116915 |
ctgtgaacttaaaataatcgagtttgtattttataccctgatgctgcctcttttctgcttatttttctgaatctgttctgcta |
18116997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 18101042 - 18101300
Alignment:
| Q |
8 |
ttaagaatctaacctcttttttgttgtcaacttgtaatcatatttagacatccactattactaatactttttagtacggactatatctacacgaaattaa |
107 |
Q |
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||||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||| | || ||||||||| | |||||| || ||||||||| |
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| T |
18101042 |
ttaagaatctaacctgttttttgttgtcaacttgttaccatatttagacattcactagtgct-------tttagtacgaaatatatccacgcgaaattaa |
18101134 |
T |
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| Q |
108 |
ttgtttttgtgagatttatctatgattgtttccataatttcttatttctcttccattttttcatgttattagtttatctctgaaacttcattgtgtgtga |
207 |
Q |
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| T |
18101135 |
ttgtttttgtgagattaatatgtgattgtttcattgatttcttagttctgtactatcttttcatgttattagtttatctctgtaacttcattgtgtgtga |
18101234 |
T |
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| Q |
208 |
aaaaattcatttcatatatcacggctgttgctcattaatgtggcttgttcagccactgattatatt |
273 |
Q |
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| T |
18101235 |
aaaaattcatttcgtatatcacggctgttagtcattaatgtagcttgtttagtcactgattatatt |
18101300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 36167812 - 36167768
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
36167812 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaat |
36167768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 41481814 - 41481770
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
41481814 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaat |
41481770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 24380162 - 24380118
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
24380162 |
gttgggaaatgcctgcataatttccctcctctgtgaactcaaaat |
24380118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 25857132 - 25857176
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
25857132 |
gttgggaaatgcctgcataatttccctcctccgtgaacttaaaat |
25857176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 4842649 - 4842693
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
4842649 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaat |
4842693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 31151927 - 31151971
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
31151927 |
gttgggaaatgcctgcataatttccctcctctctgaactcaaaat |
31151971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 33808212 - 33808168
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
33808212 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaat |
33808168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 33811866 - 33811822
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
33811866 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaat |
33811822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 33816784 - 33816740
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
33816784 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaat |
33816740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 44782525 - 44782569
Alignment:
| Q |
378 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaat |
422 |
Q |
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| T |
44782525 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaat |
44782569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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