View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423-Insertion-6 (Length: 240)
Name: NF4423-Insertion-6
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 16963773 - 16963541
Alignment:
| Q |
8 |
ggtttctggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaaaaattccatcatcag |
107 |
Q |
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| T |
16963773 |
ggtttgtggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaaaaattccatcatcag |
16963674 |
T |
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| Q |
108 |
tttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagagattaa |
207 |
Q |
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| T |
16963673 |
tttcttcaatgaaaagtcttaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagagattaa |
16963574 |
T |
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| Q |
208 |
tcttgctaacaacaaattaggacctgcatttcc |
240 |
Q |
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| T |
16963573 |
tcttgctaacaacaaattaggacctggatttcc |
16963541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 16216517 - 16216286
Alignment:
| Q |
8 |
ggtttctggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaaaaattccatcatcag |
107 |
Q |
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| T |
16216517 |
ggtttgtggggtccactaccttccaagattagtaggtt-aagtcacttgaagttttcaacatttcatcaaatttcttgtatggaaaaattccattatcag |
16216419 |
T |
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| Q |
108 |
tttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagagattaa |
207 |
Q |
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| T |
16216418 |
tttcttcaatgaaaaatctcaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagaggttaa |
16216319 |
T |
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| Q |
208 |
tcttgctaacaacaaattaggacctgcatttcc |
240 |
Q |
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| T |
16216318 |
ttttgctaacaacaaattaggacctggatttcc |
16216286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 48896089 - 48895984
Alignment:
| Q |
73 |
atcaaatttcttgtatggaaaaattccatcatcagtttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcct |
172 |
Q |
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|||||||||| |||||| ||||||||||||||| |||| || | ||||| |||| ||||||||||||| |||||||| |||| ||||||||||| | | |
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| T |
48896089 |
atcaaatttcatgtatgataaaattccatcatcaatttcctctttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacat |
48895990 |
T |
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| Q |
173 |
aatctc |
178 |
Q |
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|||||| |
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| T |
48895989 |
aatctc |
48895984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 24825194 - 24825395
Alignment:
| Q |
7 |
aggtttctggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaaaaattccatcatca |
106 |
Q |
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|||||| ||||||||| ||||| | || || | |||||| |||||| ||| || |||||||| ||||||||| | | ||| ||||||| || ||| |
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| T |
24825194 |
aggtttatggggtccattacctgcaaaaatcaacaggttttggtcactagaaattctcaacattagttcaaatttcatttctggtgaaattccttcttca |
24825293 |
T |
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| Q |
107 |
gtttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagagatta |
206 |
Q |
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||||||||||||| ||| | | |||| ||||| | ||||||||| |||||||||||| | |||| |||| || || |||||||||||||||||| ||| |
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| T |
24825294 |
atttcttcaatgaagaatttgaagagtattgttgttgctgataatcttttcaatggaaatattccagatcttaagagtttaacctctcttgaagaggtta |
24825393 |
T |
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| Q |
207 |
at |
208 |
Q |
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|| |
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| T |
24825394 |
at |
24825395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 45485624 - 45485571
Alignment:
| Q |
131 |
agtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaaga |
184 |
Q |
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||||||||||||| |||||| ||||||||||| ||||| ||| |||||||||| |
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| T |
45485624 |
agtcttgttttggaagataatgttttcaatggatgtgtttctagtctcaaaaga |
45485571 |
T |
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