View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4423_high_16 (Length: 238)
Name: NF4423_high_16
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_high_16 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 386615 - 386838
Alignment:
| Q |
15 |
tcagaaagcgtatgctatattatggtattgtcccgagacggattaaattggtgacgggaccaactttaaagattgtgattgcgcagatgttaagctcggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
386615 |
tcagaaagcgtatgctatattatggtattgtcccaagacggattaaattggtgacgggaccaactttaaagattgtgattgtgcagatgttaggctcggt |
386714 |
T |
|
| Q |
115 |
agagtctccatttgaggtgagtaaagttgttcttagagcaccaggagattctgtcatggagtggtttaagaaaccgatagttcaacagtttcttctgaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
386715 |
agagtctccatttgaggtgagtaaagttgttcttagagcaccaggagattctgtcatggagtggtttaagaaaccgatagttcagcagtttcttctgaat |
386814 |
T |
|
| Q |
215 |
gaaattccatctagggctgatatc |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
386815 |
gaaattccatctagggctgatatc |
386838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 38728927 - 38728704
Alignment:
| Q |
15 |
tcagaaagcgtatgctatattatggtattgtcccgagacggattaaattggtgacgggaccaactttaaagattgtgattgcgcagatgttaagctcggt |
114 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38728927 |
tcagaaagcgcatgctgtattatggcattgtcccgagacggattaaattggtgacgggaccaactttaaagattgtgattgcgcagatgttaagctcagt |
38728828 |
T |
|
| Q |
115 |
agagtctccatttgaggtgagtaaagttgttcttagagcaccaggagattctgtcatggagtggtttaagaaaccgatagttcaacagtttcttctgaat |
214 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||| || || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
38728827 |
agagtctccgtttgaggtaagtaaagtggttcttagggcgccgggagattctgtcatggagtggtttaagaaaccaatagttcagcagtttcttctgaat |
38728728 |
T |
|
| Q |
215 |
gaaattccatctagggctgatatc |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38728727 |
gaaattccatctagggctgatatc |
38728704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University