View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423_high_4 (Length: 449)
Name: NF4423_high_4
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 286 - 430
Target Start/End: Original strand, 46486523 - 46486667
Alignment:
| Q |
286 |
gtttcttcattttaaattaccctaactgttaccaaagcaaaagggttatactacattacacgatctcaagacatgtacctcgcccgtatgatacattgga |
385 |
Q |
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| T |
46486523 |
gtttcttcattttaaattaccctaactgttaccaaagcaaaagggttatactacattacacgatctcaagacatgtacctcgcccgtatgatacattgga |
46486622 |
T |
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| Q |
386 |
ttctggatatatggtagtataagtaattgttaggaatttggatcc |
430 |
Q |
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| T |
46486623 |
ttctggatatatggtagtatgagtaattgttaggaatttggatcc |
46486667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 46486293 - 46486431
Alignment:
| Q |
17 |
agttctagccataattaagatgtgtttgaaatctaaactagattccaagcttgaaatcataagttgattgagacaaatacatcacaaaacaccatacatg |
116 |
Q |
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| T |
46486293 |
agttctagccataattaagatgtgtttgaaatctaaactagattccaagcttgaaatcataagttgattgagacaaatacatcacaaaacaccatacatg |
46486392 |
T |
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| Q |
117 |
aaaaattaggacgaaagagacgcttagtccaagaacaag |
155 |
Q |
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| T |
46486393 |
aaaaattaggacgaaagagacgcttagtccaagaacaag |
46486431 |
T |
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