View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423_high_6 (Length: 342)
Name: NF4423_high_6
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 3710089 - 3710421
Alignment:
| Q |
1 |
aataatttgaggtttatgttcacatttaacaaagtagacatatctcagttacgaataatggtcttgtttacttaata--gaactctaatcttagnnnnnn |
98 |
Q |
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| T |
3710089 |
aataatttgaggtttatgttcacatttaacaaagtagacatatcttagttttgaataatggtcttgtttacctaatatagaactctaatctta--aaaaa |
3710186 |
T |
|
| Q |
99 |
nnctcatgtcatcaaaagcttgcaagaatgttaaactat--catactaattaattccctatctctaggaaaattaccttagcaaataatatatctagatt |
196 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710187 |
aactcatgtcatcaaaagcttggaagaatgttaaactatgtcatactaattaattccctatctctaggaaaattaccttagcaaataatatatctagatt |
3710286 |
T |
|
| Q |
197 |
atgtcacgtggtccattttaaaactcannnnnnncgtctttcaatatgtgcggggatcgtggttgcatgcatggggtgcattggacaatgactattttcc |
296 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||| |
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| T |
3710287 |
atgtcacgtggtccattttaaaactca-ttttttcgtctttcaatatgtgcggggatcgtgattgcattcatggggtgcattggagaatggctattttcc |
3710385 |
T |
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| Q |
297 |
ttgttttcttcattatttatgtgcttttcgcctttg |
332 |
Q |
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| ||| ||||||||||||||||||||||||||||| |
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| T |
3710386 |
tcatttccttcattatttatgtgcttttcgcctttg |
3710421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 9848595 - 9848623
Alignment:
| Q |
167 |
aattaccttagcaaataatatatctagat |
195 |
Q |
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| T |
9848595 |
aattaccttagcaaataatatatctagat |
9848623 |
T |
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