View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4423_high_9 (Length: 320)
Name: NF4423_high_9
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 31523637 - 31523925
Alignment:
| Q |
10 |
aaatgaacaatgtcaaataaactgatcaatcatgtatatatattaatgatctaatctaattaacaacatgatgaaactatataaataagaaaatcactga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31523637 |
aaatgaacaatgtcaaataaactgatcaatcatgtata--tattaatgatctaatctaattaacaacatgatgaaactatataaataagaaaatcactga |
31523734 |
T |
|
| Q |
110 |
aagatttgaaaatgaacctgtgaatgacattgagcaggaaattaaggttgtgatcaagtggctcatggcacatacaagtattgaagaccaaaattttaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31523735 |
aagatttgaaaatgaacctgtgaatgacattgagcaggaaataaaggttgcgatcaagtggctcatggcacatacaagtattgaagaccaaaattttaca |
31523834 |
T |
|
| Q |
210 |
ccactgacactacaatatttaacaccataattttatcaacagaggcataagtcataaccatgtgttacatatataggttcataatctaaacaaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
31523835 |
ccactgacactacaatatttaacaccataattttatcaacagaggcataagtcataaccatgtgtttc----ataggttcataatctaaacaaat |
31523925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 45652409 - 45652491
Alignment:
| Q |
181 |
atacaagtattgaagaccaaaattttacaccact----gacactacaatatttaacaccataattttatcaacagaggcataa |
259 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| | ||| |||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
45652409 |
atacaagtattgaagaccacaattttacactactaccggccacaacaatatttaacaccataattttaccatcagaggcataa |
45652491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 41022745 - 41022829
Alignment:
| Q |
109 |
aaagatttgaaaatgaacctgtgaatgacattgagcaggaaattaa-ggttgtgatcaagtggctcatggcacatacaagtattg |
192 |
Q |
| |
|
|||| |||||| | |||||||||||||| |||||| |||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41022745 |
aaagttttgaagaggaacctgtgaatgatattgagtaggaaaccaaaggttgggatcaagtggctcatggcacatacaagtattg |
41022829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University