View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423_low_1 (Length: 763)
Name: NF4423_low_1
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 18 - 763
Target Start/End: Original strand, 27567339 - 27568083
Alignment:
| Q |
18 |
agcaatatgttctgcttcttcaaaaaccacattgtggcaacgattcaatctcgtttgactgcgaacactttttcaggcgcataaattctcagttggtaac |
117 |
Q |
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| T |
27567339 |
agcaatatgttctgcttcttcaaaaaccacattgtggcaacgattcaatctcgtttgactgcgaacactttttcaggcgcataaattctcagttggtaac |
27567438 |
T |
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| Q |
118 |
ctttggggtgatttattcagtaattcaaattctatacttaaggcatgtttattctcagttcttatccacaacacttaacattattttatcgagaggtata |
217 |
Q |
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| T |
27567439 |
ctttggggtgatttattcagtaattcaaattctatacctaaggcatgtttattctcagttcttatccacaacacttaacattattttattgagaggtata |
27567538 |
T |
|
| Q |
218 |
cagttagtaaactatacaaccttctttcaaatagaatacctactttaactatgccatatattctttcttcttatcctttcttttgctaataaactatacc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
27567539 |
cagttagtaaactatacaaccttctttcaaatagaatacctactttaactatgccatatattctttcttcttatctttt-ttttgctgataaactatacc |
27567637 |
T |
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| Q |
318 |
atatactcaataactataattcaaaagtcagatatattttgaaacctacaaaagatttcagagttctctctttacaacaaagttacaaaatcatgtcata |
417 |
Q |
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| T |
27567638 |
atatactcaataactataattcaaaagtcggatatattttgaaacctacaaaagatttcagagttctctctttacaacaaagttacaaaatcatgtcata |
27567737 |
T |
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| Q |
418 |
tgagtcgtcaaaagagaccttaagtaaaatattacaaacagggagctgtctttaaattcataagtctcattttctagacattttagaccaaaagtaaact |
517 |
Q |
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| T |
27567738 |
tgagtcatcaaaagagaccttaagtaaaatcttacaaccagggagctgtctttaaattcttaagtctcattttctagacattttagaccaaaagtaaact |
27567837 |
T |
|
| Q |
518 |
acaaagaaacaaattaaagcaaaacaaataacatgaacaatatggttcgaaccactttggatgatgctcttgttcaatcttcttagattattcttcactc |
617 |
Q |
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| T |
27567838 |
acaaagaaacaaattaaagcaaaacaaataacatgaacaatatggttcgaaccactttggatgatgctcttgttcaatcttcttagattattcttcactc |
27567937 |
T |
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| Q |
618 |
cagctttagcctttatcattgtcatttgctgtattaaaatagaaaacttaaaatgttaatgcgacggttgggacatttacctactaaagagtacataaat |
717 |
Q |
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| T |
27567938 |
cagcttgagcctttatcattgtcatttgctgtattaaaatagaaaacttaaaatgttaatgagacggttgggacatttacctactaaagagtacataaat |
27568037 |
T |
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| Q |
718 |
tgatcaattactaggactcaatattcgataaaaagcaattatactc |
763 |
Q |
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| T |
27568038 |
tgatcaattactaggactcaatattcgataaaaagcaattatactc |
27568083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 548 - 656
Target Start/End: Original strand, 45755528 - 45755636
Alignment:
| Q |
548 |
acatgaacaatatggttcgaaccactttggatgatgctcttgttcaatcttcttagattattcttcactccagctttagcctttatcattgtcatttgct |
647 |
Q |
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||||||||||||||||| |||||| || | | ||| ||| |||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||| |
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| T |
45755528 |
acatgaacaatatggtttgaaccatttcgcacgatactcctgttcaatcttcttagattattcttcaccccagcttgagcctttgccactgtcatttgct |
45755627 |
T |
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| Q |
648 |
gtattaaaa |
656 |
Q |
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| T |
45755628 |
gcattaaaa |
45755636 |
T |
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