View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423_low_10 (Length: 314)
Name: NF4423_low_10
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 66 - 300
Target Start/End: Complemental strand, 3709824 - 3709590
Alignment:
| Q |
66 |
gttgtgtagaaaacaacaatcaatgtgaagaagatttttacttatcactttattactgacgtgatatggtacacttatcaaattatccatcggtccacat |
165 |
Q |
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| T |
3709824 |
gttgtgtagaaaacaacaatcaatgtgaagaagatttttacttatcactttattactcatgtgatttggtacacttatcaaattatccatcggtccacat |
3709725 |
T |
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| Q |
166 |
atgacatcatatatttcatgcttaggcgaactcatgttctacaatttgttcatgtccatgcattctaccatgttcatacataacatatttgcatgtgttt |
265 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3709724 |
atgatatcatatattccatgcttaggcgaactcatgttctacaattttttgatgtccatgcattctaccatgttcatacataacatacttgcatgtgttc |
3709625 |
T |
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| Q |
266 |
gcgtttacaaaaacctaccatacttgcatgctact |
300 |
Q |
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| T |
3709624 |
acgtttacaaaaacctaacatacttacatgctact |
3709590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3710051 - 3709988
Alignment:
| Q |
1 |
atttctcttttattttctttgcaaacaactcttacgcacaccacccatttattgtttttatttt |
64 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3710051 |
atttctcttttattttctttgcaaacaactcttacgcacaccacccatttattgtttttttttt |
3709988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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