View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4423_low_13 (Length: 250)

Name: NF4423_low_13
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4423_low_13
NF4423_low_13
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-244)||(21166-21410)
[»] chr4 (2 HSPs)
chr4 (1-244)||(17778197-17778441)
chr4 (1-84)||(32663370-32663453)
[»] chr2 (7 HSPs)
chr2 (1-244)||(26369978-26370222)
chr2 (85-244)||(27632981-27633141)
chr2 (1-92)||(27634812-27634903)
chr2 (4-54)||(10943931-10943981)
chr2 (4-54)||(10949800-10949850)
chr2 (24-77)||(10421369-10421422)
chr2 (42-78)||(19537941-19537977)
[»] chr1 (1 HSPs)
chr1 (1-244)||(20491022-20491263)
[»] chr3 (3 HSPs)
chr3 (103-244)||(8087719-8087859)
chr3 (1-59)||(8087858-8087916)
chr3 (44-76)||(14504466-14504498)
[»] chr8 (1 HSPs)
chr8 (1-213)||(95720-95933)
[»] chr5 (2 HSPs)
chr5 (24-77)||(21740027-21740080)
chr5 (42-70)||(7211855-7211883)


Alignment Details
Target: scaffold0250 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 21410 - 21166
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttggttttgtccaacaaat 100  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21410 ctctaatacacatacctaatccaaccttgtttaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttgattttgtccaacaaat 21311  T
Q  101 attaccatgttgctgccgaggcacaaaatccgtttgttgcag-tttctaacaaatttccactcatgcaagctgtctttcacgcgagatagaacaaaggtg 199  Q
    |||||||||||| ||||||| |||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  21310 attaccatgttgttgccgagacacaaaatccatttgttgcagatttctaaccaatttccactcatgcaagttgtctttcgcgcgagatagaacaaaggtg 21211  T
Q  200 tttgcatctgtaaccttattccagaccttattgttcctttgcttc 244  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  21210 tttgcatctgtaaccttattccacaccttattgttcctttgcttc 21166  T

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Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 17778197 - 17778441
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttggttttgtccaacaaat 100  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17778197 ctctaatacacatacataatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttgtatctacctgcatttggttttgtccaacaaat 17778296  T
Q  101 attaccatgttgctgccgaggcacaaaatccgtttgttgcag-tttctaacaaatttccactcatgcaagctgtctttcacgcgagatagaacaaaggtg 199  Q
    ||||||||||| |||||||||||||||||| ||||| ||||| || ||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  17778297 attaccatgttactgccgaggcacaaaatctgtttgctgcagattactagccaatttccactcatgcaaactgtctttcgcgcgagatagaacaaaggtg 17778396  T
Q  200 tttgcatctgtaaccttattccagaccttattgttcctttgcttc 244  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  17778397 tttgcatctgtaaccttattccacaccttatcgttcctttgcttc 17778441  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 32663453 - 32663370
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttg 84  Q
    ||||||||| |||| || |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||    
T  32663453 ctctaatactcatatctaatccaatcttgttcaggtgcttcaaaaaggatgcatcaatattgcatttgtatctaccagcatttg 32663370  T

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Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26370222 - 26369978
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttggttttgtccaacaaat 100  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  26370222 ctctaatacatatacctaatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttgtatctacctgcatttggttttgtccagcaaat 26370123  T
Q  101 attaccatgttgctgccgaggcacaaaatccgtttgttgcag-tttctaacaaatttccactcatgcaagctgtctttcacgcgagatagaacaaaggtg 199  Q
    |||||||||||| |||||||||||| |||| ||||| ||||| |||||| | |||||||||||||||||| |||||||| ||||||||||||||||||      
T  26370122 attaccatgttgttgccgaggcacataatctgtttgctgcagatttctagccaatttccactcatgcaagttgtctttcgcgcgagatagaacaaaggca 26370023  T
Q  200 tttgcatctgtaaccttattccagaccttattgttcctttgcttc 244  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  26370022 tttgcatatgtaaccttattccacaccttattgttcctttgcttc 26369978  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 27633141 - 27632981
Alignment:
Q  85 gttttgtccaacaaatattaccatgttgctgccgaggcacaaaatccgtttgttgcag-tttctaacaaatttccactcatgcaagctgtctttcacgcg 183  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||| | |||||| ||||    
T  27633141 gttttgtccaacaaatattaccatgttgttgccgaggcacaaaatctgtttgttgcagatttctagccaatttccactcatgcaagttatctttcgcgcg 27633042  T
Q  184 agatagaacaaaggtgtttgcatctgtaaccttattccagaccttattgttcctttgcttc 244  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  27633041 acatagaacaaaggtgtttgcatctgtaaccttattccacaccttattgtacctttgcttc 27632981  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27634903 - 27634812
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttggttttgtc 92  Q
    ||||||||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  27634903 ctctaatacacatacctaatccaatcttgttcaggtgcttgaaaaaggatgcatcaatattgcatttgtatctacttgcatttggttttgtc 27634812  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 10943981 - 10943931
Alignment:
Q  4 taatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcat 54  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10943981 taatacacatacctaatccaaccttgttcaggtgcttcgaaaaggatgcat 10943931  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 10949850 - 10949800
Alignment:
Q  4 taatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcat 54  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10949850 taatacacatacctaatccaaccttgttcaggtgcttcgaaaaggatgcat 10949800  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 10421369 - 10421422
Alignment:
Q  24 accttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacct 77  Q
    ||||||||||| ||| | |||||||| || ||||||||||||||||||||||||    
T  10421369 accttgttcagatgccttgaaaaggaagcgtcaatattgcatttatatctacct 10421422  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 19537941 - 19537977
Alignment:
Q  42 gaaaaggatgcatcaatattgcatttatatctacctg 78  Q
    |||||||||||||||||||| |||||| |||||||||    
T  19537941 gaaaaggatgcatcaatattacatttaaatctacctg 19537977  T

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Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 20491263 - 20491022
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttggttttgtccaacaaat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  20491263 ctctaatacacatacctaatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttgtatctacctgcatttggttttgtctaacaaat 20491164  T
Q  101 attaccatgttgctgccgaggcacaaaatccgtttgttgc-agtttctaacaaatttccactcatgcaagctgtctttcacgcgagatagaacaaaggtg 199  Q
    |||||||| ||||||||||||||||||||| ||||| ||| | |||||| | ||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  20491163 attaccatattgctgccgaggcacaaaatctgtttgctgcaaatttctacccaatttccactcatgcaagctgtctttcgcgcaagatagaacaaacgtg 20491064  T
Q  200 tttgcatctgtaaccttattccagaccttattgttcctttgcttc 244  Q
    ||||||||||||||||||||||| |||   |||||||||||||||    
T  20491063 tttgcatctgtaaccttattccacacc---ttgttcctttgcttc 20491022  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 8087859 - 8087719
Alignment:
Q  103 taccatgttgctgccgaggcacaaaatccgtttgttgcag-tttctaacaaatttccactcatgcaagctgtctttcacgcgagatagaacaaaggtgtt 201  Q
    ||||||||||||||||||||||||||||  |||| ||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  8087859 taccatgttgctgccgaggcacaaaatctatttgctgcagatttctagccaatttccactcatgcaagctgtctttcgcgcgagatagaacaaaggcgtt 8087760  T
Q  202 tgcatctgtaaccttattccagaccttattgttcctttgcttc 244  Q
    ||||   |||||||| ||||| |||||||||||||||||||||    
T  8087759 tgca--ggtaacctttttccacaccttattgttcctttgcttc 8087719  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8087916 - 8087858
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaata 59  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  8087916 ctctaatatacatgcctaatccaaccttgttcaggtgcttcgaaaaggatgcatcaata 8087858  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 14504466 - 14504498
Alignment:
Q  44 aaaggatgcatcaatattgcatttatatctacc 76  Q
    |||||||||||||| ||||||||||||||||||    
T  14504466 aaaggatgcatcaacattgcatttatatctacc 14504498  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 95933 - 95720
Alignment:
Q  1 ctctaatacacatacctgatccaaccttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacctgcatttggttttgtccaacaaat 100  Q
    |||||||||||||||    |||||  || |||||||| |||||||||||||||||||||||||||||  ||||||||||||  |||||| | |||||||     
T  95933 ctctaatacacatactcattccaattttattcaggtgtttcgaaaaggatgcatcaatattgcatttgaatctacctgcatacggttttctgcaacaaaa 95834  T
Q  101 attaccatgttgctgccgaggcacaaaatccgtttgttgcagt-ttctaacaaatttccactcatgcaagctgtctttcacgcgagatagaacaaaggtg 199  Q
    ||| || |||||||||||| | |||| ||  |||||||||| | ||||| | || || ||||| | |||| |||| ||   ||| ||||||||||||| |    
T  95833 attgccttgttgctgccgaagaacaagatatgtttgttgcattgttctagccaacttacactcctacaagatgtcctttgtgcgtgatagaacaaaggcg 95734  T
Q  200 tttgcatctgtaac 213  Q
    ||| ||||||||||    
T  95733 tttacatctgtaac 95720  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 21740080 - 21740027
Alignment:
Q  24 accttgttcaggtgcttcgaaaaggatgcatcaatattgcatttatatctacct 77  Q
    ||||||||||  ||| | |||||||| || ||||||||||||||||||||||||    
T  21740080 accttgttcaaatgcctggaaaaggaagcgtcaatattgcatttatatctacct 21740027  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 7211855 - 7211883
Alignment:
Q  42 gaaaaggatgcatcaatattgcatttata 70  Q
    |||||||||||||||||||||||||||||    
T  7211855 gaaaaggatgcatcaatattgcatttata 7211883  T

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