View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423_low_3 (Length: 480)
Name: NF4423_low_3
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 99 - 397
Target Start/End: Complemental strand, 42940821 - 42940514
Alignment:
| Q |
99 |
gtggcttcttactagttattagttgctggtgatcgatgtagatagaga---------------gaattgtggtgagatatggtttaagagagaaacttaa |
183 |
Q |
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| T |
42940821 |
gtggcttcttactagttattagttgctggtgatcgatgtagatagagacagagaaagtagagagaattgtggtgagat--ggtttaagagagaaacttaa |
42940724 |
T |
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| Q |
184 |
gatgagatgtaagaatggtagatattacttaggttgttatataaggttgtttattagacacacatactccgtagctaaattaaggtggtaggtagatcga |
283 |
Q |
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| T |
42940723 |
gatgagatgtaagaatggtagatattacttaggttgttatataaggttgtttattagacacac----tccgtagctaaattaaggtggtaggtagatcga |
42940628 |
T |
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| Q |
284 |
gttgacatacatacttgtgactttctctctcaagtggtcaatatttttgtttaataataatgttgctcacaaacaacctaaactcctacctaatcatctc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42940627 |
gttgacatacatacttgtgactttctctctcaagtggtctatatttttgtttaataataatgttggtcacaaacaacctaaactcctacctaatcatctc |
42940528 |
T |
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| Q |
384 |
ttcaaactacgttc |
397 |
Q |
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| T |
42940527 |
ttcaaactacgttc |
42940514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 42940470 - 42940418
Alignment:
| Q |
416 |
attaatataaatgggttgagtttatgaatgttgaagttagcatgttgtttcat |
468 |
Q |
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|||||||||||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
42940470 |
attaatataaattggtttagtatatgaatgttgaagttagcatgttgtttcat |
42940418 |
T |
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