View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4423_low_5 (Length: 387)
Name: NF4423_low_5
Description: NF4423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4423_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 62 - 373
Target Start/End: Original strand, 43953277 - 43953587
Alignment:
| Q |
62 |
gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacattcatggttactcttgcacatgttgaaaccttgattaagttaagcatt |
161 |
Q |
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| T |
43953277 |
gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacactcatggttactcatgcacatgttgaaaccttgattaagttaagcatt |
43953376 |
T |
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| Q |
162 |
ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt |
261 |
Q |
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| T |
43953377 |
ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt |
43953476 |
T |
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| Q |
262 |
tcgtatgagtatcataaatcagaggagaggctagctagtgtaataattcattcaaaaatat--tgagttaacatgaattgatcactaataaaatcatcat |
359 |
Q |
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| T |
43953477 |
tcgtatgagtatcataaatcagaggagaggctagctagtg---taattcattcaaaaatattgtgagttaacatgaattgatcactaataaaatcatcat |
43953573 |
T |
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| Q |
360 |
ccctgagaagaaga |
373 |
Q |
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|||||||||||||| |
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| T |
43953574 |
ccctgagaagaaga |
43953587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43953173 - 43953234
Alignment:
| Q |
1 |
aatgtttatttggcggtgtcacaatcattgatgttgcatcccatggcatagaaataaattag |
62 |
Q |
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| T |
43953173 |
aatgtttatttggcggtgtcacaatcattgatgttgcatcccatggcatagaaataaattag |
43953234 |
T |
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