View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4424_high_10 (Length: 313)
Name: NF4424_high_10
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 29987201 - 29987497
Alignment:
| Q |
1 |
caacacgtttctaatatgcctttgatacatctcatgattgttcaattttcccctccttaattagatgaatgtaaattataatatatacccaagttaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29987201 |
caacacgtttctaatatgcctttgatacatctcatgattgttcaattttcccctccttaattagatgaatgtaaattataatatataccca-gttaattt |
29987299 |
T |
|
| Q |
101 |
attagaannnnnnnnnnnnnnnnnnnnnnncccataattctcttacggttgcaaattgaaatcacagctaactaagagtgcatataatatgtcatactta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29987300 |
attagaattttttaagttttctttctttttcccataattctcttacggttgcaaattgaaatcacagctaactaagagtgcatataatatgtcatactta |
29987399 |
T |
|
| Q |
201 |
ccaattgtgaacaaatcactatagaggatagagttccgagctttattttaatttttatgtgtatgttaaatgcatcgtattctatatttttcaatgat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29987400 |
ccaattgtgaacaaatcactatagaggatagagttccgagctttattttaatttttatgtgtatgttaaatgcatcgtattctatatttttcaatgat |
29987497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 29996956 - 29997060
Alignment:
| Q |
132 |
ccataattctcttacggttgcaaattgaaatcacagctaactaagagtgcatataatatgtcatacttaccaattgtgaacaaatcactatagaggatag |
231 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| | |||||| |||||||||||||| |
|
|
| T |
29996956 |
ccataattattttacggttgcaaattgaaatcacagctaactaagagtgcatgtaatatgccaaacttaccaattctaaacaaacaactatagaggatag |
29997055 |
T |
|
| Q |
232 |
agttc |
236 |
Q |
| |
|
||||| |
|
|
| T |
29997056 |
agttc |
29997060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 29988055 - 29988131
Alignment:
| Q |
159 |
aaatcacagctaactaagagtgcatataatatgtcatacttaccaattgtgaacaaatcactatagaggatagagtt |
235 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||| || |||||| |||| |||||||| ||||||| ||||||||||| |
|
|
| T |
29988055 |
aaatcaaaactaactaatagtgcatataatatgccacacttacaaattatgaacaaaccactataaaggatagagtt |
29988131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 29988691 - 29988731
Alignment:
| Q |
257 |
atgtgtatgttaaatgcatcgtattctatatttttcaatga |
297 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
29988691 |
atgtgtatgttaaatgtatcgtatcctatatttttcaatga |
29988731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University