View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4424_high_11 (Length: 309)

Name: NF4424_high_11
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4424_high_11
NF4424_high_11
[»] chr6 (3 HSPs)
chr6 (111-293)||(29445126-29445309)
chr6 (113-168)||(35030846-35030900)
chr6 (12-40)||(29445027-29445055)
[»] chr8 (4 HSPs)
chr8 (229-287)||(38047368-38047426)
chr8 (243-288)||(9515031-9515076)
chr8 (229-282)||(41891005-41891058)
chr8 (231-287)||(10005555-10005611)
[»] chr4 (4 HSPs)
chr4 (118-207)||(22508013-22508103)
chr4 (229-287)||(52157045-52157102)
chr4 (249-287)||(52743069-52743107)
chr4 (118-187)||(31063528-31063597)
[»] chr3 (3 HSPs)
chr3 (233-287)||(29436817-29436871)
chr3 (233-287)||(21652845-21652899)
chr3 (231-283)||(45030096-45030148)
[»] chr1 (1 HSPs)
chr1 (229-287)||(35739853-35739911)
[»] chr2 (2 HSPs)
chr2 (231-287)||(26775255-26775311)
chr2 (229-284)||(41635546-41635601)
[»] chr5 (2 HSPs)
chr5 (229-286)||(4738527-4738583)
chr5 (231-287)||(33583680-33583736)
[»] chr7 (2 HSPs)
chr7 (239-287)||(2703987-2704035)
chr7 (239-287)||(32416026-32416074)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 111 - 293
Target Start/End: Original strand, 29445126 - 29445309
Alignment:
Q  111 tcaatgacataataggaaaataactattaattaatcatcgatattgtaaaatgacataatttgaaata-atattttttgctagaatggcataatttggaa 209  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  29445126 tcaatggcataatagaaaaataactattaattaatcatcgatattgtcaaatgacataatttggaatatatattttttgctagaatggcataatttggaa 29445225  T
Q  210 cggatgaagtaccatttactcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcatatgtatt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29445226 cggatgaagtaccatttactcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcatatgtatt 29445309  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 35030900 - 35030846
Alignment:
Q  113 aatgacataataggaaaataactattaattaatcatcgatattgtaaaatgacata 168  Q
    ||||||||||||| |||||||  ||||||||||||| ||||| |||||||||||||    
T  35030900 aatgacataatagaaaaataaacattaattaatcat-gatatagtaaaatgacata 35030846  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 29445027 - 29445055
Alignment:
Q  12 atgaaattttataaataaggcatattaat 40  Q
    |||||||||||||||||||||||||||||    
T  29445027 atgaaattttataaataaggcatattaat 29445055  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 38047426 - 38047368
Alignment:
Q  229 tcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||||||||| |||||||||| ||||||||||  | ||||||||||||||||||||||    
T  38047426 tcttttaatatatttttctcatatcattaataagagataattttgtaaaatcactcata 38047368  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 9515076 - 9515031
Alignment:
Q  243 tttctcatgtcattaataaatgttaattttgtaaaatcactcatat 288  Q
    |||||||| |||||||| |||| |||||||||||||| ||||||||    
T  9515076 tttctcatatcattaatgaatgataattttgtaaaattactcatat 9515031  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 41891058 - 41891005
Alignment:
Q  229 tcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcac 282  Q
    ||||||||| |||||||||| |||| ||||||||   |||||||||||||||||    
T  41891058 tcttttaatctctttttctcgtgtcgttaataaagaataattttgtaaaatcac 41891005  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 10005611 - 10005555
Alignment:
Q  231 ttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||||||| |||||||||| |||||||| |  | ||||||| ||||||||||||||    
T  10005611 ttttaatatttttttctcatatcattaattagaggtaattttataaaatcactcata 10005555  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 22508103 - 22508013
Alignment:
Q  118 cataataggaaaataactattaattaatcatcgatattgtaaaatgacataattt-gaaataatattttttgctagaatggcataatttgg 207  Q
    ||||||||||||||||  ||||||   |||| ||||||||||||||||||||||| | |  || || ||||||||||||| ||||||||||    
T  22508103 cataataggaaaataagcattaatagttcattgatattgtaaaatgacataatttgggacaaacatattttgctagaatgacataatttgg 22508013  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 52157102 - 52157045
Alignment:
Q  229 tcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||||||||||||||||||| ||| |||||||  | ||||||||||||||||||||||    
T  52157102 tcttttaatatctttttctcacgtc-ttaataagggataattttgtaaaatcactcata 52157045  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 52743069 - 52743107
Alignment:
Q  249 atgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  52743069 atgtcattaataaatgatcattttgtaaaatcactcata 52743107  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 31063597 - 31063528
Alignment:
Q  118 cataataggaaaataactattaattaatcatcgatattgtaaaatgacataatttgaaataatatttttt 187  Q
    |||||| |||||||||  |||| ||| | || |||||||||||||||||||||||| || ||| ||||||    
T  31063597 cataatgggaaaataagcattacttatttattgatattgtaaaatgacataatttggaacaatttttttt 31063528  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 29436817 - 29436871
Alignment:
Q  233 ttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||||| |||||| ||||||||||||||  | ||||||||||||||||||||||    
T  29436817 ttaatatatttttcccatgtcattaataagagataattttgtaaaatcactcata 29436871  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 21652899 - 21652845
Alignment:
Q  233 ttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||| |||||||||||| | ||||||||| | |||||||||||||||| |||||    
T  21652899 ttaatctctttttctcatattattaataaaggataattttgtaaaatcattcata 21652845  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 45030148 - 45030096
Alignment:
Q  231 ttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcact 283  Q
    ||||||| ||||||||  || ||||||||||||| |||| |||||||||||||    
T  45030148 ttttaatctctttttcctatatcattaataaatgataatcttgtaaaatcact 45030096  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 35739911 - 35739853
Alignment:
Q  229 tcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||||||| |||||||  ||||||||||||||| | |||||||||||||||| |||||    
T  35739911 tcttttaatctcttttttccatgtcattaataaaggataattttgtaaaatcaatcata 35739853  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 26775255 - 26775311
Alignment:
Q  231 ttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||||| ||||| |||||||||||||||||  | ||| ||||||||||||||||||    
T  26775255 ttttaatctctttatctcatgtcattaataagggataaatttgtaaaatcactcata 26775311  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 41635601 - 41635546
Alignment:
Q  229 tcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactc 284  Q
    ||||||||  |||||||| ||| ||||||||||| | |||||||||||||||||||    
T  41635601 tcttttaacctctttttcccatatcattaataaaagataattttgtaaaatcactc 41635546  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 4738527 - 4738583
Alignment:
Q  229 tcttttaatatctttttctcatgtcattaataaatgttaattttgtaaaatcactcat 286  Q
    |||||||||||||||||||||| | |||||| || | ||||||||||||||| |||||    
T  4738527 tcttttaatatctttttctcatattattaat-aaggataattttgtaaaatctctcat 4738583  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 33583736 - 33583680
Alignment:
Q  231 ttttaatatctttttctcatgtcattaataaatgttaatttt-gtaaaatcactcata 287  Q
    ||||||| ||||||| |||||||| ||||||||| ||||||| |||||||||||||||    
T  33583736 ttttaatctcttttt-tcatgtcaataataaatgataatttttgtaaaatcactcata 33583680  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 2704035 - 2703987
Alignment:
Q  239 tctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    |||||||||||||||||| |||| || ||||||| |||||||| |||||    
T  2704035 tctttttctcatgtcatttataagtgataattttataaaatcattcata 2703987  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 32416026 - 32416074
Alignment:
Q  239 tctttttctcatgtcattaataaatgttaattttgtaaaatcactcata 287  Q
    ||||||| ||||||||||||| |||| ||||||| |||||||| |||||    
T  32416026 tctttttttcatgtcattaatgaatgataattttataaaatcattcata 32416074  T

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