View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4424_high_13 (Length: 269)
Name: NF4424_high_13
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 37117250 - 37117498
Alignment:
| Q |
1 |
caaggaaaacccatttctgtgctcttttcagctgattttgacaataaagatgagaacttgagagccctggtacaacaagagatgccataaccatgaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37117250 |
caaggaaaacccatttctgtgctcttttcagctgattttgacaataaagatgagaacttgagagccctggtacaacaagagatgccataaccatgaagat |
37117349 |
T |
|
| Q |
101 |
taa---ggtcaatgattcttctcacctctttgcagtgtacttgagaatacacaaatacattacaaagaaatttgaagtatgagaaatggaaaaagggaaa |
197 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37117350 |
taattaggtcaatgattcttctcacctctttgcagtgtacttgagaatacacaaatacattacaaagaaatttgaagtatgagaaatggaaaaagggaaa |
37117449 |
T |
|
| Q |
198 |
cccaaaaatggaaactttggttattttggg-aaagaagactctttcata |
245 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37117450 |
ccgaaaaatggaaactttggttattttgggaaaagaagactctttcata |
37117498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University