View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4424_high_16 (Length: 259)

Name: NF4424_high_16
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4424_high_16
NF4424_high_16
[»] chr8 (3 HSPs)
chr8 (1-245)||(37684640-37684884)
chr8 (8-245)||(34391384-34391619)
chr8 (8-107)||(5296386-5296486)
[»] chr1 (5 HSPs)
chr1 (6-250)||(12760446-12760692)
chr1 (75-225)||(14486490-14486639)
chr1 (85-172)||(14497565-14497652)
chr1 (7-81)||(25695764-25695839)
chr1 (8-61)||(10024006-10024059)
[»] chr6 (1 HSPs)
chr6 (5-243)||(26387276-26387514)
[»] chr5 (2 HSPs)
chr5 (5-243)||(21033360-21033598)
chr5 (26-239)||(19335315-19335525)
[»] chr4 (12 HSPs)
chr4 (5-109)||(5765359-5765463)
chr4 (5-109)||(5767603-5767707)
chr4 (5-117)||(5769896-5770008)
chr4 (127-250)||(5764461-5764584)
chr4 (127-250)||(5766705-5766828)
chr4 (127-250)||(5769003-5769126)
chr4 (129-245)||(5728574-5728690)
chr4 (127-250)||(5762435-5762556)
chr4 (5-243)||(2488689-2488923)
chr4 (5-111)||(25098431-25098538)
chr4 (5-141)||(6892146-6892282)
chr4 (78-179)||(21761717-21761817)
[»] chr3 (7 HSPs)
chr3 (129-245)||(18652344-18652460)
chr3 (9-145)||(52733364-52733501)
chr3 (66-136)||(7808015-7808085)
chr3 (199-245)||(27209986-27210032)
chr3 (102-149)||(11523995-11524042)
chr3 (66-108)||(25828591-25828633)
chr3 (45-149)||(26255141-26255247)
[»] chr7 (2 HSPs)
chr7 (5-128)||(48867141-48867265)
chr7 (8-138)||(5220574-5220705)
[»] chr2 (2 HSPs)
chr2 (5-237)||(35509113-35509342)
chr2 (1-31)||(12544814-12544844)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 37684884 - 37684640
Alignment:
Q  1 tgaatgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttggattggttgactgaggggttatgttcctagtcttgct 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37684884 tgaatgggatcatgaacccattatgtgctggcacctttagttacttgtggtggatttgtcttggattggttgactgaggggttatgttcctagtcttgct 37684785  T
Q  101 cttgttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttgttttctgtgggagagattttatgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37684784 cttgttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttttagttttcgctcttgttttctgtgggagagattttatgtg 37684685  T
Q  201 tttttattattgcttgacttgagtacttcttgtactctaatttct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37684684 tttttattattgcttgacttgagtacttcttgtactctaatttct 37684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 34391384 - 34391619
Alignment:
Q  8 gatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttggattggttgactgaggggttatgttcctagtcttgctcttgttc 107  Q
    ||||||||| |||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||||    
T  34391384 gatcatgaatccattatgtgctcgcaccgttagtgacttgtggtggatttgtcttggattggttgac---agggttttgttcctagtcttgctcttgttc 34391480  T
Q  108 ggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttg-ttttctgtgggagagattttatgtgttttta 206  Q
    || | |||    ||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||  |   ||| | ||||||||||    
T  34391481 ggttgtggccaagtgttcctgataggagtttagttggttttccgttggtgttttagttttcgcttttgtttttctgtgataagaattctgtgtgttttta 34391580  T
Q  207 ttattgcttgacttgagtacttcttgtactctaatttct 245  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  34391581 ttattgcttgacttaagtacttcttatactctaatttct 34391619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 5296386 - 5296486
Alignment:
Q  8 gatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttgga-ttggttgactgaggggttatgttcctagtcttgctcttgtt 106  Q
    |||||| ||| |||||| |||||| ||  ||||| ||||||||  |||||||||  || || |||||||||||  || ||||||||||||| ||||||||    
T  5296386 gatcataaactcattatatgttggtactattagtgacttgtggcagatttgtctatgagttagttgactgaggaattttgttcctagtcttcctcttgtt 5296485  T
Q  107 c 107  Q
    |    
T  5296486 c 5296486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 12760446 - 12760692
Alignment:
Q  6 gggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttggattggttgactgagggg-ttatgttcctagtcttgctcttg 104  Q
    |||||||||||| ||||  |||||  |||  ||||| |||| |||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||     
T  12760446 gggatcatgaactcattcagtgtttacactgttagtgacttatggttgatttgtcttggattggttgactgagggggttctgttgctagtcttgctcttt 12760545  T
Q  105 ttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttgtttt-ctgtgggagagattttatgtgttt 203  Q
     ||| ||||||||| || ||  | |||||||||| |||||||||| ||||||||| || |||||||||||||||| || ||| || |||| |||||||||    
T  12760546 atcgactatggttgagtcttcgtcataggagttttgttggttttccgttggtgttttaattttcgctcttgtttttctatggaagggattctatgtgttt 12760645  T
Q  204 ttattattgcttgacttgagtacttcttgtactctaatttctctgtg 250  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12760646 ttattattgcttgacttgagtacttcttgtactctaatttctatgtg 12760692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 14486490 - 14486639
Alignment:
Q  75 tgaggggttatgttcctagtcttgctcttgttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctctt 174  Q
    |||| |||| ||||||| ||||| ||||| ||||||| |||||| || |||||||||||| |||||||| |||||   |||| || ||||||||||||||    
T  14486490 tgagaggttttgttccttgtctttctcttattcggctttggttgagtatttctgataggattttagttgattttctaatggtattttagttttcgctctt 14486589  T
Q  175 gt-tttctgtgggagagattttatgtgtttttattattgcttgacttgagta 225  Q
    || ||| | |||||| ||  |||  |  ||||||||||||||||||||||||    
T  14486590 gtatttttttgggagggacatta--ttattttattattgcttgacttgagta 14486639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 14497565 - 14497652
Alignment:
Q  85 tgttcctagtcttgctcttgttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctc 172  Q
    |||| ||| |||| ||||| || |||| |||||| |||||||| |||||||||||||||| |||||| ||||||| ||||||||||||    
T  14497565 tgtttctaatctttctcttatttggctgtggttgagtgtttcttataggagtttagttgggtttcagatggtgttttagttttcgctc 14497652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 25695839 - 25695764
Alignment:
Q  7 ggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtct-tggattggttgactgagggg 81  Q
    ||||||||||| ||||||||||||||||| |||||  |||||||  |||||||||  || ||||||||| ||||||    
T  25695839 ggatcatgaactcattatgtgttggcaccgttagtgtcttgtggcagatttgtctaggggttggttgaccgagggg 25695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 10024006 - 10024059
Alignment:
Q  8 gatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtct 61  Q
    |||||||||| |||||||||||||| || |||||  ||||||| ||||||||||    
T  10024006 gatcatgaacacattatgtgttggccccgttagtgtcttgtggcggatttgtct 10024059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 26387514 - 26387276
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttg-gattggttgactgaggggttatgttcctagtcttgctctt 103  Q
    ||||||||||||| |||| | ||||| |||| ||||  ||||||||  ||||| ||||| |||||||||| ||||||||| ||||| |||||||  ||||    
T  26387514 tgggatcatgaactcattttatgttgacaccgttagggacttgtggcagatttatcttgagattggttgattgaggggttttgttcttagtcttcatctt 26387415  T
Q  104 gttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttgt-tttctgtgggagagattttatgtgtt 202  Q
    |||||| | |||||| ||||| ||||| | | ||||| |||||||  ||||||||| |||||||| ||||||| ||| |||||||| ||  || | |  |    
T  26387414 gttcggttgtggttgagtgttcctgatggaaatttagatggttttttgttggtgttttagttttcactcttgtgtttatgtgggaggga--ttctttcat 26387317  T
Q  203 tttattattgcttgacttgagtacttcttgtactctaattt 243  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  26387316 tttattatcgcttgacttgagtacttcttgtactctaattt 26387276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 21033360 - 21033598
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttg-gattggttgactgaggggttatgttcctagtcttgctctt 103  Q
    |||||| |||||| |||| | |||||||||| ||||  ||||||||  ||||||||||| ||||||||||| |||||||| ||||||||||||| |||||    
T  21033360 tgggataatgaactcattttatgttggcaccgttagggacttgtggcagatttgtcttgagattggttgaccgaggggttttgttcctagtcttcctctt 21033459  T
Q  104 gttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttg-ttttctgtgggagagattttatgtgtt 202  Q
    |||||| | |||||| ||||| ||||| | | ||||  |||||||  ||||||| | |||||||| |||||| |||||||| ||||  |  || | |  |    
T  21033460 gttcggttgtggttgagtgttcctgatggaaatttatatggttttttgttggtgatttagttttcactcttgtttttctgttggaggaa--ttctttcat 21033557  T
Q  203 tttattattgcttgacttgagtacttcttgtactctaattt 243  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  21033558 tttattatcgcttgacttgagtacttcttatactctaattt 21033598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 19335525 - 19335315
Alignment:
Q  26 tgttggcacctttagttacttgtggtggatttgtcttggattggttgactgaggggttatgttcctagtcttgctcttgttcggctatggttgtgtgttt 125  Q
    |||||| ||| ||||| | ||||||||||||| ||| || |||||||| ||||||||| |||||||||| ||||||||||| |||| |||||| |||||     
T  19335525 tgttggtaccgttagtgatttgtggtggatttctctagggttggttgaatgaggggttttgttcctagttttgctcttgtttggctgtggttgagtgttc 19335426  T
Q  126 ctgataggagtttagttggt-tttcagttggtgttatagttttcgctcttgttttctgtgggagagattttatgtgtttttattattgcttgacttgagt 224  Q
     |||| |||||||||||||| ||| ||||   | | | |||||   | || |||| |||||||| | || | |||||||| |||||||||||| ||||||    
T  19335425 ttgatgggagtttagttggtgttttagtt-tcgctcttgtttt---tttttttttttgtgggagggtttatgtgtgttttaattattgcttgatttgagt 19335330  T
Q  225 acttcttgtactcta 239  Q
    |||||||||||||||    
T  19335329 acttcttgtactcta 19335315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 5765463 - 5765359
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttggattggttgactgaggggttatgttcctagtcttgctcttg 104  Q
    ||||||||||||| |||| | ||||| |||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5765463 tgggatcatgaacacattctatgttgacaccgttagtgacttatggtagatttgtcttggattggttgactgatgggttatgttcctagtcttgctcttg 5765364  T
Q  105 ttcgg 109  Q
    |||||    
T  5765363 ttcgg 5765359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 5767707 - 5767603
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttggattggttgactgaggggttatgttcctagtcttgctcttg 104  Q
    ||||||||||||| |||| | ||||| |||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5767707 tgggatcatgaacacattctatgttgacaccgttagtgacttatggtagatttgtcttggattggttgactgatgggttatgttcctagtcttgctcttg 5767608  T
Q  105 ttcgg 109  Q
    |||||    
T  5767607 ttcgg 5767603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 5770008 - 5769896
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttggattggttgactgaggggttatgttcctagtcttgctcttg 104  Q
    ||||||||||||| |||| | ||||| |||  ||||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5770008 tgggatcatgaacacattctatgttgacactgttagtgacttatggtagatttgtcttggattggttgactgatgggttatgttcctagtcttgctcttg 5769909  T
Q  105 ttcggctatggtt 117  Q
    || |||| |||||    
T  5769908 ttgggctgtggtt 5769896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 5764584 - 5764461
Alignment:
Q  127 tgataggagtttagttggttttcagttggtgttatagttttcgctcttgtttt-ctgtgggagagattttatgtgtttttattattgcttgacttgagta 225  Q
    ||||||||||||||||||||||| ||||||||| ||||| |  || ||||||| ||||||| | |||| ||||| |||||||||||||||||||| ||||    
T  5764584 tgataggagtttagttggttttccgttggtgttttagttcttacttttgtttttctgtgggtgggattctatgt-tttttattattgcttgactttagta 5764486  T
Q  226 cttcttgtactctaatttctctgtg 250  Q
    ||||||||||  |||||||| ||||    
T  5764485 cttcttgtacattaatttctatgtg 5764461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 5766828 - 5766705
Alignment:
Q  127 tgataggagtttagttggttttcagttggtgttatagttttcgctcttgtttt-ctgtgggagagattttatgtgtttttattattgcttgacttgagta 225  Q
    ||||||||||||||||||||||| ||||||||| ||||| |  || ||||||| ||||||| | |||| ||||| |||||||||||||||||||| ||||    
T  5766828 tgataggagtttagttggttttccgttggtgttttagttcttacttttgtttttctgtgggtgggattctatgt-tttttattattgcttgactttagta 5766730  T
Q  226 cttcttgtactctaatttctctgtg 250  Q
    ||||||||||  |||||||| ||||    
T  5766729 cttcttgtacattaatttctatgtg 5766705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 5769126 - 5769003
Alignment:
Q  127 tgataggagtttagttggttttcagttggtgttatagttttcgctcttg-ttttctgtgggagagattttatgtgtttttattattgcttgacttgagta 225  Q
    ||||||||||||||||||||||| ||||||||| ||||| |  || ||| ||||||||||| | |||| ||||| |||||||||||||||||||| | ||    
T  5769126 tgataggagtttagttggttttccgttggtgttttagttcttacttttggttttctgtgggtgggattctatgt-tttttattattgcttgactttatta 5769028  T
Q  226 cttcttgtactctaatttctctgtg 250  Q
    |||||||||| ||||||||| ||||    
T  5769027 cttcttgtacactaatttctatgtg 5769003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 5728690 - 5728574
Alignment:
Q  129 ataggagtttagttggttttcagttggtgttatagttttcgctcttg-ttttctgtgggagagattttatgtgtttttattattgcttgacttgagtact 227  Q
    ||||||||||||||||||||| ||||||||| ||||| |  || ||| ||||||| ||| |  ||| ||||| |||||||||||||||||||| ||||||    
T  5728690 ataggagtttagttggttttccgttggtgttttagttcttactattgtttttctgcgggtggaattctatgt-tttttattattgcttgactttagtact 5728592  T
Q  228 tcttgtactctaatttct 245  Q
    ||||||||||||||||||    
T  5728591 tcttgtactctaatttct 5728574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 5762556 - 5762435
Alignment:
Q  127 tgataggagtttagttggttttcagttggtgttatagttttcgctcttgttttctgtgggagagattttatgtgtttttattattgcttgacttgagtac 226  Q
    ||||||||||||||||||||||| ||||||||| ||||| |  || ||||||| | || | | |||| ||||| ||||||||||| |||||||| |||||    
T  5762556 tgataggagtttagttggttttccgttggtgttttagttcttacttttgtttt-tctgtgtgggattctatgt-tttttattattacttgactttagtac 5762459  T
Q  227 ttcttgtactctaatttctctgtg 250  Q
    ||||||||||||||||||| ||||    
T  5762458 ttcttgtactctaatttctatgtg 5762435  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 2488689 - 2488923
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttg-gattggttgactgaggggttatgttcctagtcttgctctt 103  Q
    |||||||||||||||||| |||||||||||| |||||   |||| | ||| |||||| | | |||||||||||||||||| || || || || | |||||    
T  2488689 tgggatcatgaacccattctgtgttggcaccgttagtgttttgtagcggaattgtctcgtggttggttgactgaggggttctgctcataatcctcctctt 2488788  T
Q  104 gttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttgttttctgtgggagagattttatgtgttt 203  Q
    ||||||||    ||| ||||| ||| ||||||||   |||  |||| ||||  ||| ||||| | ||||||||||| ||| |||| |  ||| | || ||    
T  2488789 gttcggctggcattgggtgttcctgttaggagtt---ttgtgtttctgttgtggttttagttcttgctcttgttttttgttggaggg--tttgtttgatt 2488883  T
Q  204 ttattattgcttgacttgagtacttcttgtactctaattt 243  Q
    ||||||| ||||||| |||||||||||| ||||| |||||    
T  2488884 ttattatcgcttgacgtgagtacttcttatactcaaattt 2488923  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 25098431 - 25098538
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttgga-ttggttgactgaggggttatgttcctagtcttgctctt 103  Q
    ||||||||||||| ||||||||||||||||| ||| |  ||||||| |||||||| | ||| ||||||||| || ||||| ||||  | ||||| |||||    
T  25098431 tgggatcatgaacacattatgtgttggcaccgttaatatcttgtggcggatttgtttaggagttggttgaccgaagggttttgttaatggtcttcctctt 25098530  T
Q  104 gttcggct 111  Q
    ||||||||    
T  25098531 gttcggct 25098538  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 6892282 - 6892146
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttg-gattggttgactgaggggttatgttcctagtcttgctctt 103  Q
    ||||||||||||| |||||||||||||| || |||||   |||||| |||||| ||  | |||||| ||| |||||||||||||||||||| || | |||    
T  6892282 tgggatcatgaactcattatgtgttggccccgttagtattttgtggcggatttatccagcgattggctgattgaggggttatgttcctagt-tttcgctt 6892184  T
Q  104 gttcggctatggttgtgtgtttctgataggagtttagt 141  Q
    ||| || | |||||  |||||  |||||||||||||||    
T  6892183 gttgggttgtggttaggtgttcatgataggagtttagt 6892146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 21761717 - 21761817
Alignment:
Q  78 ggggttatgttcctagtcttgctcttgttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttgtt 177  Q
    ||||||||||||||||| || || ||||| || | | |||| |||||  |||||||| ||||| |||||||| | || |||| |||||||||||||| ||    
T  21761717 ggggttatgttcctagttttccttttgttaggttgttgttgggtgttcatgataggaatttagatggttttctggtgttgtt-tagttttcgctcttatt 21761815  T
Q  178 tt 179  Q
    ||    
T  21761816 tt 21761817  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 18652460 - 18652344
Alignment:
Q  129 ataggagtttagttggttttcagttggtgttatagttttcgctcttg-ttttctgtgggagagattttatgtgtttttattattgcttgacttgagtact 227  Q
    ||||||||||||||||||||| ||||||||| ||||| |  || ||| ||||||| ||| |  ||| ||||| |||||||||||||||||||| ||||||    
T  18652460 ataggagtttagttggttttccgttggtgttttagttcttactattgtttttctgcgggtggaattctatgt-tttttattattgcttgactttagtact 18652362  T
Q  228 tcttgtactctaatttct 245  Q
    ||||||||||||||||||    
T  18652361 tcttgtactctaatttct 18652344  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 52733501 - 52733364
Alignment:
Q  9 atcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtctt-ggattggttgactgaggggttatgttcctagtcttgctcttgttc 107  Q
    ||||||||| |||| |||| ||||||| ||||  |||||||  ||||||||||| || ||| |||| |||||||||||||| ||||| || |||||||||    
T  52733501 atcatgaactcattttgtggtggcaccattagagacttgtgacggatttgtcttcgggttgattgattgaggggttatgttgctagttttcctcttgttc 52733402  T
Q  108 ggctatggttgtgtgtttctgataggagtttagttggt 145  Q
    || | |||||| || ||| | ||| |||||||| ||||    
T  52733401 ggttgtggttgagtatttgtaataagagtttagatggt 52733364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 7808085 - 7808015
Alignment:
Q  66 ttggttgactgaggggttatgttcctagtcttgctcttgttcggctatggttgtgtgtttctgataggagt 136  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||  ||||| ||||| |||||| ||||    
T  7808085 ttggttgactgaggggttatgttccgagtcttcctcttgttcgactgaggttgggtgttactgatatgagt 7808015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 27209986 - 27210032
Alignment:
Q  199 tgtttttattattgcttgacttgagtacttcttgtactctaatttct 245  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||    
T  27209986 tgtttttattatcgcttgatttgagtacttcgtgtactctaatttct 27210032  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 11524042 - 11523995
Alignment:
Q  102 ttgttcggctatggttgtgtgtttctgataggagtttagttggttttc 149  Q
    ||||| |||| |||||| ||||||||||||||||| ||||||||||||    
T  11524042 ttgtttggctgtggttgggtgtttctgataggagtgtagttggttttc 11523995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 25828591 - 25828633
Alignment:
Q  66 ttggttgactgaggggttatgttcctagtcttgctcttgttcg 108  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||    
T  25828591 ttggttgattgatgggttatgttcctagtctttctcttgttcg 25828633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 26255247 - 26255141
Alignment:
Q  45 ttgtggtggatttgtctt-ggattggttgactgaggggttatgttcctagtcttgctcttgttcggctatggttgt-gtgtttctgataggagtttagtt 142  Q
    |||||| |||||||| || || ||||||||||||| | || ||||||||||||| || |||||||| | ||||| | |||||  |||||| ||| |||||    
T  26255247 ttgtggaggatttgtattcggcttggttgactgagagattttgttcctagtcttccttttgttcggttgtggttttggtgttcatgatagaagtgtagtt 26255148  T
Q  143 ggttttc 149  Q
    |||||||    
T  26255147 ggttttc 26255141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 48867141 - 48867265
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttg-gattggttgactgaggggttatgttcctagtcttgctctt 103  Q
    |||||||||||||  | | |||| || ||||  |||| |||||||||||||||||   | | |||||||| ||||||||||||||||||||||| |||||    
T  48867141 tgggatcatgaacttaatctgtgctgacaccgatagtgacttgtggtggatttgtaaagaggttggttgagtgaggggttatgttcctagtcttcctctt 48867240  T
Q  104 gttcggctatggttgtgtgtttctg 128  Q
    |||||| | | |||| |||||||||    
T  48867241 gttcggttgttgttgagtgtttctg 48867265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 5220574 - 5220705
Alignment:
Q  8 gatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtcttgga-ttggttgactgaggggttatgttcctagtcttgctcttgtt 106  Q
    |||| |||||||| | |||||||||| | |||||  |||||||| ||||||||| ||  |||||||||||||||||||| ||  | ||||| |||||| |    
T  5220574 gatcttgaacccactttgtgttggcatcgttagtgtcttgtggtagatttgtctaggggttggttgactgaggggttatatttatggtcttcctcttgct 5220673  T
Q  107 cggctatggttgtgtgtttctgataggagttt 138  Q
    ||| | | |||| ||||| ||  |||||||||    
T  5220674 cggttgttgttgggtgttcctattaggagttt 5220705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 35509113 - 35509342
Alignment:
Q  5 tgggatcatgaacccattatgtgttggcacctttagttacttgtggtggatttgtctt-ggattggttgactgaggggttatgttcctagtcttgctctt 103  Q
    ||||||||||||| ||||||||| ||  ||   ||||  ||||||| |||||||| |  || |||||||||  |||| |||||||| ||||||| | |||    
T  35509113 tgggatcatgaactcattatgtgatgatactgatagtgtcttgtggcggatttgtttaagggttggttgaccaagggattatgttcatagtcttccgctt 35509212  T
Q  104 gttcggctatggttgtgtgtttctgataggagtttagttggttttcagttggtgttatagttttcgctcttgtttt-ctgtgggagagattttatgtgtt 202  Q
    ||||  || |||||| ||||  ||| ||||||||||  || ||||   ||  |||| ||||||||||||||||||| || | |||| |||||| | | ||    
T  35509213 gttctactgtggttgggtgtc-ctgttaggagtttaaatgttttt---tttttgttttagttttcgctcttgttttactattggagggattttttttatt 35509308  T
Q  203 tttattattgcttgacttgagtacttcttgtactc 237  Q
    ||| ||||| |||||||||||||||| ||||||||    
T  35509309 ttt-ttattacttgacttgagtacttattgtactc 35509342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 12544844 - 12544814
Alignment:
Q  1 tgaatgggatcatgaacccattatgtgttgg 31  Q
    |||||||||||||||||||||||||||||||    
T  12544844 tgaatgggatcatgaacccattatgtgttgg 12544814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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