View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_high_5 (Length: 399)
Name: NF4424_high_5
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 2951206 - 2950820
Alignment:
| Q |
15 |
gtgagatgaaaccaaccccaataaaagtccatactaaatacttctattattagatcttttatagagtttgaacataggaaatttaccaacaagtaaaat- |
113 |
Q |
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| T |
2951206 |
gtgacatgaaaccaaccccaataaaagtccatactaaatacttctattattagatcttttatagagtttgaacataggaaatttaccaacaagtaaaatg |
2951107 |
T |
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| Q |
114 |
-cacacacttgagtcttgccaccaatttgtctatagaaacaagtcaaattaaaaacaatttaatatcaatatttgaccaagcactcaaccaacaaagacc |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2951106 |
tcacacacttgagtcttgccaccaacttgtctatagaaacgagtcaaattaaaaacaatttcatatcaatatttgaccaagcactcaaccaacaaagacc |
2951007 |
T |
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| Q |
213 |
tgttttttaacagaaaaaccaatagcttttgattggtttgagaagcattctaaaattcacatttcataaacaaactcaatttgatcaattaaccaacact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
2951006 |
tgttttttaacagaaaaaccaatagcttttgattggtttgagaagcattctaaaattcacatttcataaacaaactcaatttgatcaactaatcaacact |
2950907 |
T |
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| Q |
313 |
aaaatagttgaattatcaacgaaaattagagacgaaaaagtattttagactctaatattgtcatcgcttagcacgacacaaacatta |
399 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
2950906 |
aaaaaagttgaattatcaacgaaaattagagacgaaaaaatattttagactctaatattgtcatcgtttagcacgacacaaaaatta |
2950820 |
T |
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