View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_10 (Length: 341)
Name: NF4424_low_10
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 12550203 - 12550507
Alignment:
| Q |
17 |
cataggaggaaacactgtgttggcgtctgagaaatctgaatgaaaaaggtgtgattaaggttaaccctacaatgaagacaacattgatggattgggagca |
116 |
Q |
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| T |
12550203 |
cataggaggaaacactgtgttggcgtctgagaaatctgaatgaaaaaggtgtgattaaggttaaccctacaatgaagacaacattgatggattgggagca |
12550302 |
T |
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| Q |
117 |
ggtggagactgcttaatgcttgagagaattatcaatgatgcagaggttggttggtaataacaatgtatccgatgcatgcaaataaaaagaaaatgacaaa |
216 |
Q |
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| T |
12550303 |
ggtggagactgcttaatgcttgagagaattatcaatgatgcagaggttggttggtaataacaatgtattcgatgcatgcaaataaaaagaaaatgacaaa |
12550402 |
T |
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| Q |
217 |
agttgtgacaccattgatgagaaaacaagcaactcagaatttctttttaaatctttatttaccaaatctttgaatattaaggttggccataaaaatctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550403 |
agttgtgacaccattgatgagaaaacaagcaactcagaatttctttttaaatctttatttaccaaatctttgaatattaaggttggccataaaaatctat |
12550502 |
T |
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| Q |
317 |
accag |
321 |
Q |
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||||| |
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| T |
12550503 |
accag |
12550507 |
T |
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