View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_11 (Length: 328)
Name: NF4424_low_11
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_11 |
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| [»] scaffold0187 (4 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 1874 - 1547
Alignment:
| Q |
1 |
tggccttggctcaagcgggtaccatttaagggtaattttgtaatctgaaccgtagcatttaaatacaaggtgtagactatacaccctaatttttcactga |
100 |
Q |
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| T |
1874 |
tggccttggctcaagcgggtatcatttaagggtaattttgtaatctgaaccgtagtatttaaatacaaggtgtagactataaaccctaatttttcactga |
1775 |
T |
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| Q |
101 |
tattacaaagaaactgaagtagctatgtactcgaagacgtaggcacattattggctgtatatggtgacttgtgacagaaggaatagtcaatgactgaatg |
200 |
Q |
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| T |
1774 |
tattacaaagaaactgaagtagctatgtactcgaagacgtaggcacattattggctgtatatggtgacttgtgacagaaggaatagtcaatgactgaatg |
1675 |
T |
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| Q |
201 |
atgttcattcaatcatggtggatgatggatcatcgataatatataaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattg |
300 |
Q |
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| T |
1674 |
atgttcattcaatcatggtggatgatggatcatcgataatatataaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattg |
1575 |
T |
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| Q |
301 |
gatgagtgagaaataaaatagagtagcc |
328 |
Q |
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| T |
1574 |
gatgagtgagaaataaaatagagtagcc |
1547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 8861 - 8743
Alignment:
| Q |
205 |
tcattcaatcatggtggatgatggatcatcgataatatataaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattggatg |
304 |
Q |
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| T |
8861 |
tcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatatata-----gtcttttacaaagaacattattggatg |
8767 |
T |
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| Q |
305 |
agtgagaaataaaatagagtagcc |
328 |
Q |
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| T |
8766 |
agtgagaattaaaatagagtagcc |
8743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 19189 - 19071
Alignment:
| Q |
205 |
tcattcaatcatggtggatgatggatcatcgataatatataaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattggatg |
304 |
Q |
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| T |
19189 |
tcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatatata-----gtcttttacaaagaacattattggatg |
19095 |
T |
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| Q |
305 |
agtgagaaataaaatagagtagcc |
328 |
Q |
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| T |
19094 |
agtgagaattaaaatagagtagcc |
19071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 30060 - 29981
Alignment:
| Q |
244 |
taaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagcc |
328 |
Q |
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| T |
30060 |
taaaatcagaaagattaccggtatatata-----gtcttttacaaggaacattattggatgagtgagaaataaaatagtgtagcc |
29981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 37865812 - 37865913
Alignment:
| Q |
222 |
atgatggatcatcgataatatataaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattggatgagtgagaaataaaatag |
321 |
Q |
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| T |
37865812 |
atgatggatcatcgatcatacataaaatcagaaagattattggtatatat-----agtcttttacaaagaacattattggatgagtgagaattaaaatag |
37865906 |
T |
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| Q |
322 |
agtagcc |
328 |
Q |
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| T |
37865907 |
agtagcc |
37865913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 37909017 - 37909096
Alignment:
| Q |
244 |
taaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagcc |
328 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
37909017 |
taaaatcagaaagattaccggtatatat-----agtcttttacaaggaacattattggatgagtgagaaataaaatagtgtagcc |
37909096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 327
Target Start/End: Original strand, 37879683 - 37879831
Alignment:
| Q |
179 |
aggaatagtcaatgactgaatgatgttcattcaatcatggtggatgatggatcatcgata-----atatataaaatcagaaagattactggtatatataa |
273 |
Q |
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| T |
37879683 |
aggaatagtcaataactaaatgatattcattcaattatggtggatgacggatcatggaagtgaacatacataaactcaaaaagattgcaagtatatgta- |
37879781 |
T |
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| Q |
274 |
tatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagc |
327 |
Q |
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| T |
37879782 |
----gtcttttacaaagaacatacttgaatgaatgagaaataaaatagagtagc |
37879831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 37916240 - 37916285
Alignment:
| Q |
283 |
ttacaaagaacattattggatgagtgagaaataaaatagagtagcc |
328 |
Q |
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| T |
37916240 |
ttacatagaacataattgaatgaatgagaaataaaatagagtagcc |
37916285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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