View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4424_low_15 (Length: 285)

Name: NF4424_low_15
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4424_low_15
NF4424_low_15
[»] chr7 (13 HSPs)
chr7 (15-267)||(4713144-4713396)
chr7 (80-267)||(4854579-4854766)
chr7 (22-263)||(4784920-4785161)
chr7 (22-263)||(4817349-4817590)
chr7 (22-267)||(4698275-4698520)
chr7 (25-266)||(4862676-4862917)
chr7 (15-85)||(4847099-4847169)
chr7 (97-183)||(4652390-4652476)
chr7 (97-166)||(4635744-4635813)
chr7 (97-183)||(4629779-4629865)
chr7 (97-183)||(4665805-4665891)
chr7 (97-166)||(4660688-4660757)
chr7 (112-166)||(4671527-4671581)
[»] chr4 (1 HSPs)
chr4 (106-166)||(18926908-18926968)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 4713144 - 4713396
Alignment:
Q  15 gatatcaatgactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713144 gatatcaatgactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtg 4713243  T
Q  115 tactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713244 tactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaa 4713343  T
Q  215 aatgttacaatgaaggtgtgatagttgaagagatggtggacccgttcataaag 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713344 aatgttacaatgaaggtgtgatagttgaagagatggtggacccgttcataaag 4713396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 80 - 267
Target Start/End: Original strand, 4854579 - 4854766
Alignment:
Q  80 acctacgaaacaagttgactcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttgga 179  Q
    |||||||||||| ||||||||| |||||||| |||||||| ||||| | ||| ||||||||| ||||||||||||||||||||||||||||||  |||||    
T  4854579 acctacgaaacaggttgactctaaagtctgatgtgtactctttcggtgatgtacttcttgagatgttgtgtgcgagaccacctttggatcatttattgga 4854678  T
Q  180 taaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatgaaggtgtgatagttgaagagatggtggacccgttcataaag 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  4854679 taagaaaaaagtgaacatggttgctttgttcaaaaaatgttacaatgaaggagtgatagttgaagagatggtggacccattcataaag 4854766  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 4784920 - 4785161
Alignment:
Q  22 atgactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcat 121  Q
    ||||| |||||||||||||||||||| |||||| | || |||||||||||||| | |||| | ||| | | ||||||||| |||||||| |||||||| |    
T  4784920 atgacccatgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctt 4785019  T
Q  122 tcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgtta 221  Q
    |||| |||||||||||||||||||||||||||||||| || |||| || ||||||||||||| ||||||  |   ||| || || |||  ||| ||||||    
T  4785020 tcggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgtta 4785119  T
Q  222 caatgaaggtgtgatagttgaagagatggtggacccgttcat 263  Q
    |||||||||| || || ||||||| |||||||||||||||||    
T  4785120 caatgaaggtatggtaattgaagatatggtggacccgttcat 4785161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 4817349 - 4817590
Alignment:
Q  22 atgactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcat 121  Q
    ||||| |||||||||||||||||||| |||||| | || |||||||||||||| | |||| | ||| | |  |||||||| |||||||| |||||||| |    
T  4817349 atgacccatgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaagattgactctaaagtctgatgtgtactctt 4817448  T
Q  122 tcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgtta 221  Q
    |||| |||||||||||||||||||||||||||||||| || |||| ||  |||||||||||| ||||||  |   ||| || || |||  ||| ||||||    
T  4817449 tcggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcggtctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgtta 4817548  T
Q  222 caatgaaggtgtgatagttgaagagatggtggacccgttcat 263  Q
    |||||||||| || || ||||||| |||||||||||||||||    
T  4817549 caatgaaggtatggtaattgaagatatggtggacccgttcat 4817590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 4698275 - 4698520
Alignment:
Q  22 atgactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcat 121  Q
    ||||| || |||||||||| ||||||||||||| | || ||||| ||||| || | |||||| ||  | | |||||| || ||||| ||||||||||| |    
T  4698275 atgacccacgtcagcactaaggtgaagggtagtctcgggtatttagatcccgaatactaccttcgtcaaaggttgaccctaaagtccgacgtgtactctt 4698374  T
Q  122 tcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgtta 221  Q
    | || ||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||| |||||| ||   | ||   || |||| ||| ||||||    
T  4698375 ttggtgttgtgcttcttgaggtattgtgtgcgagaccacctttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttccaaagatgtta 4698474  T
Q  222 caatgaaggtgtgatagttgaagagatggtggacccgttcataaag 267  Q
    |||||||||||||||  | |||||||||||||||||||||||||||    
T  4698475 caatgaaggtgtgatcatcgaagagatggtggacccgttcataaag 4698520  T

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Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 266
Target Start/End: Complemental strand, 4862917 - 4862676
Alignment:
Q  25 actcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattcg 124  Q
    ||||| ||||||||  |||||||||||||| | |||||||| |||||||| | |||||| ||  | | ||||||||| || || |||||||| || ||||    
T  4862917 actcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaaggttgactctaaaatccgacgtgtattctttcg 4862818  T
Q  125 gagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaa 224  Q
    | ||||| ||||||||||||||||||||||||||||| |||| || |||||  || ||| |||||| ||   | || | || |||  |||||||||||||    
T  4862817 gtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttcttctgaaaagaaaaaagcgagtttagtcgtttggtttcaaaaatgttacaa 4862718  T
Q  225 tgaaggtgtgatagttgaagagatggtggacccgttcataaa 266  Q
    ||||||||| ||| ||||||||||||| || |||||||||||    
T  4862717 tgaaggtgtcataattgaagagatggtagatccgttcataaa 4862676  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 4847099 - 4847169
Alignment:
Q  15 gatatcaatgactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctac 85  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  4847099 gatatcaatgactcatgtaagcactatggtgaagggtagtataggatatttggatccagaatgttacctac 4847169  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 4652476 - 4652390
Alignment:
Q  97 actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag 183  Q
    ||||| || ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| || |  ||||||||||    
T  4652476 actctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag 4652390  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 4635813 - 4635744
Alignment:
Q  97 actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg 166  Q
    |||||||| || ||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||    
T  4635813 actcttaaatcagacgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctaggccacctttgg 4635744  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 4629865 - 4629779
Alignment:
Q  97 actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag 183  Q
    ||||| || |||||||||||||| || || || ||||||||||||||||||||||| ||||||||||||| || |  ||||||||||    
T  4629865 actctaaaatctgacgtgtactcgtttggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag 4629779  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 4665891 - 4665805
Alignment:
Q  97 actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag 183  Q
    ||||| || ||||| |||||||| ||||| || ||||||||||||||||||||||| ||||||||||||| || |  ||||||||||    
T  4665891 actctaaaatctgatgtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag 4665805  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 4660757 - 4660688
Alignment:
Q  97 actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg 166  Q
    ||||| || ||||| |||||||| ||||| || ||||||||||||||||||||||| || ||||| ||||    
T  4660757 actctaaaatctgaagtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctaggccaccattgg 4660688  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 4671581 - 4671527
Alignment:
Q  112 gtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg 166  Q
    |||||||||||||| || || |||||||| ||||||||||| || ||||||||||    
T  4671581 gtgtactcattcggtgtggtacttcttgaagtgttgtgtgctaggccacctttgg 4671527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 18926908 - 18926968
Alignment:
Q  106 tctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg 166  Q
    |||||||||||||||||||| || |||||||||||||| |||||||| || ||||||||||    
T  18926908 tctgacgtgtactcattcggtgtggtgcttcttgaggtattgtgtgcaaggccacctttgg 18926968  T

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