View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_17 (Length: 265)
Name: NF4424_low_17
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 34342210 - 34342143
Alignment:
| Q |
7 |
tcgaaacagtataccaatccaagaataaatcgacaccatgtattgaacaccgtataaaatatatctag |
74 |
Q |
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| T |
34342210 |
tcgacacagtatatcaatccaagaataaatcgacaccatgtattgaacaccgtataaaatatatctag |
34342143 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 34342142 - 34342103
Alignment:
| Q |
216 |
tttccatcatgattttggtgttttacgtactttgcctatg |
255 |
Q |
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| T |
34342142 |
tttccatcatgattttggtgttttacgtactttgcctatg |
34342103 |
T |
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