View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_18 (Length: 260)
Name: NF4424_low_18
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 5177358 - 5177110
Alignment:
| Q |
1 |
gatcaatttataacaaaataaaacttaaaaaccaatttgtaaaatctaatttaattatatttatatagtttagagactaaattatatagcttaaagaata |
100 |
Q |
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| T |
5177358 |
gatcaatttataacaaaataaaacttaaaaaccaatttgtaaaatctaatttaattatatttatatagttttgagactaaattatatagcttaaagaata |
5177259 |
T |
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| Q |
101 |
aattagagaaagtgatacttgaaaagattagattgatggtttattcctcatattattgaatgtacatttatatattataggaagagggtgctttataact |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5177258 |
aattagagaaagtgatacttgaaaaaattagattgatggtttattcctcatattattgaatgtacatttatatattataggaagagggtgctttataact |
5177159 |
T |
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| Q |
201 |
ttataaagcgaatctttgatgcatttgttgatctctttgaactcttctt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5177158 |
ttataaagcgaatctttgatgcatttgttgatctctttgaactcttctt |
5177110 |
T |
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