View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_2 (Length: 698)
Name: NF4424_low_2
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 312 - 591
Target Start/End: Original strand, 927018 - 927297
Alignment:
| Q |
312 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
411 |
Q |
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| T |
927018 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
927117 |
T |
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| Q |
412 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
927118 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
927217 |
T |
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| Q |
512 |
tatagctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
591 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
927218 |
tatacctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
927297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 926247 - 926560
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcgatgatctcttctt---tggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagt |
97 |
Q |
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| T |
926247 |
tcggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagt |
926346 |
T |
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| Q |
98 |
ttatttggatgcattcaacaagtgtttatttttaggctatttataaa----gtcatggagatgnnnnnnnggaagttgcacggaagaaaggtcgaagttg |
193 |
Q |
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| T |
926347 |
ttatttggatgcattcaacaagtgtttatttttaggctatttataaataaagtcatggagatgaaaaaaaggaagttgcacggaagaaaggtcgaagttg |
926446 |
T |
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| Q |
194 |
ggatcaagcaagaaagtgaagtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926447 |
ggatcaagcaagaaagtgaagtaatggatttcaaggctgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatg |
926546 |
T |
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| Q |
294 |
aagctcacatccat |
307 |
Q |
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| T |
926547 |
aagctcacatccat |
926560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 594 - 660
Target Start/End: Original strand, 927849 - 927915
Alignment:
| Q |
594 |
ctaagactgttttaacttcgcttgcctgttactttcctttcttaacaaggcaaacctcaaatatcac |
660 |
Q |
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| T |
927849 |
ctaaaactgttttaacttcgcttgcctattactttcctttcttaacaaggcaaacctcaaatatcac |
927915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 924473 - 924555
Alignment:
| Q |
213 |
agtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaa |
295 |
Q |
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| T |
924473 |
agtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaatggatccaagcctatgaa |
924555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 928567 - 928641
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccat |
75 |
Q |
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| T |
928567 |
tcggagtgtgatttggttcaaatcaatgatttcttctttgccacatggttttgaagaaataaaagtttcctccat |
928641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 939492 - 939569
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccataac |
78 |
Q |
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| T |
939492 |
tcggagtgtgatttggttcaaatcaatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataac |
939569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 935700 - 935740
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcgatgatctcttctttgg |
41 |
Q |
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| T |
935700 |
tcggagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 924212 - 924278
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtt |
67 |
Q |
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|||||||||||||||| | | ||| || ||||||||||||||| ||||||||| |||||| ||||| |
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| T |
924212 |
tcggagtgtgatttgggttagatcaattctctcttctttggcacctggtttggaagaaatagaagtt |
924278 |
T |
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