View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4424_low_26 (Length: 234)

Name: NF4424_low_26
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4424_low_26
NF4424_low_26
[»] chr1 (11 HSPs)
chr1 (1-221)||(16315170-16315390)
chr1 (1-221)||(30704350-30704570)
chr1 (8-221)||(23941518-23941731)
chr1 (45-221)||(12063480-12063656)
chr1 (125-221)||(3368237-3368333)
chr1 (125-222)||(25817616-25817713)
chr1 (125-221)||(48025756-48025851)
chr1 (19-112)||(36185892-36185985)
chr1 (125-221)||(33402909-33403005)
chr1 (125-221)||(35577289-35577385)
chr1 (189-221)||(18426408-18426440)
[»] chr7 (10 HSPs)
chr7 (1-221)||(11356214-11356435)
chr7 (22-221)||(44221906-44222105)
chr7 (8-221)||(23941226-23941439)
chr7 (44-211)||(4278521-4278688)
chr7 (80-195)||(13070509-13070624)
chr7 (125-221)||(2369701-2369797)
chr7 (125-221)||(4452425-4452521)
chr7 (81-221)||(31730863-31731004)
chr7 (125-211)||(4452757-4452843)
chr7 (91-221)||(12868579-12868710)
[»] chr4 (20 HSPs)
chr4 (1-221)||(50336235-50336455)
chr4 (1-221)||(33990638-33990858)
chr4 (8-221)||(43210035-43210246)
chr4 (18-221)||(1938473-1938676)
chr4 (1-221)||(12656391-12656618)
chr4 (19-221)||(156889-157091)
chr4 (13-221)||(41418799-41419007)
chr4 (64-221)||(50008840-50008997)
chr4 (1-160)||(5534180-5534339)
chr4 (80-221)||(22182184-22182325)
chr4 (125-221)||(24972607-24972703)
chr4 (125-221)||(36499124-36499220)
chr4 (125-221)||(55523943-55524039)
chr4 (125-221)||(12586403-12586499)
chr4 (125-221)||(23283379-23283475)
chr4 (129-220)||(45246797-45246888)
chr4 (154-221)||(6599385-6599452)
chr4 (8-41)||(157088-157121)
chr4 (8-41)||(18486355-18486388)
chr4 (8-37)||(50009005-50009034)
[»] chr5 (13 HSPs)
chr5 (1-221)||(20887710-20887930)
chr5 (3-221)||(29195870-29196088)
chr5 (13-221)||(32910473-32910681)
chr5 (19-207)||(35050308-35050496)
chr5 (84-218)||(15235085-15235222)
chr5 (125-218)||(38739554-38739647)
chr5 (125-210)||(16109319-16109403)
chr5 (93-213)||(8736460-8736582)
chr5 (125-221)||(30491558-30491655)
chr5 (125-221)||(763148-763243)
chr5 (125-220)||(33143948-33144043)
chr5 (125-221)||(34017442-34017538)
chr5 (122-221)||(5504930-5505025)
[»] chr3 (13 HSPs)
chr3 (23-221)||(30933838-30934036)
chr3 (1-221)||(14443763-14443983)
chr3 (8-221)||(20518092-20518305)
chr3 (64-221)||(54335593-54335750)
chr3 (65-221)||(53767164-53767320)
chr3 (79-221)||(11916884-11917026)
chr3 (80-221)||(30528452-30528593)
chr3 (125-221)||(34086604-34086700)
chr3 (125-221)||(7666732-7666828)
chr3 (125-221)||(35995304-35995400)
chr3 (125-221)||(19866950-19867047)
chr3 (125-221)||(35063134-35063229)
chr3 (166-221)||(39649748-39649803)
[»] chr8 (10 HSPs)
chr8 (1-196)||(41600996-41601191)
chr8 (26-161)||(22661800-22661935)
chr8 (81-218)||(14189735-14189875)
chr8 (80-221)||(24626076-24626217)
chr8 (81-221)||(13868221-13868363)
chr8 (46-179)||(20534367-20534500)
chr8 (80-221)||(32074982-32075121)
chr8 (81-218)||(2807203-2807340)
chr8 (81-220)||(27188222-27188363)
chr8 (133-221)||(34276417-34276505)
[»] chr2 (9 HSPs)
chr2 (8-221)||(9829387-9829600)
chr2 (65-221)||(20927548-20927704)
chr2 (125-221)||(22787818-22787914)
chr2 (125-217)||(35000444-35000536)
chr2 (125-221)||(8277226-8277322)
chr2 (125-221)||(11573851-11573954)
chr2 (132-205)||(31133335-31133408)
chr2 (80-185)||(20500419-20500526)
chr2 (123-221)||(19987720-19987820)
[»] scaffold1050 (1 HSPs)
scaffold1050 (65-221)||(2001-2157)
[»] scaffold0599 (1 HSPs)
scaffold0599 (79-221)||(8635-8777)
[»] scaffold0037 (1 HSPs)
scaffold0037 (125-221)||(38152-38248)
[»] chr6 (5 HSPs)
chr6 (115-221)||(13543697-13543802)
chr6 (125-221)||(31522388-31522484)
chr6 (125-221)||(32275586-32275682)
chr6 (86-221)||(8518467-8518604)
chr6 (114-197)||(7452411-7452495)
[»] scaffold1063 (1 HSPs)
scaffold1063 (125-221)||(1643-1739)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16315390 - 16315170
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16315390 ccgttccaaatttatccttgcgcaccttaagtaacgctgcgcaacttaactcacgcagcgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 16315291  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16315290 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaa 16315191  T
Q  201 atcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||||||    
T  16315190 atcgtcaggaagcaagtttct 16315170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30704570 - 30704350
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||||||||||||| |||| || |||||||||||||||| | ||||||||||||| || |||||||||||| |||||||||||||||||||||||||     
T  30704570 ccgttctaaatttaccattgcacatcttaagtaacgctgcgcaccttaactcacgcagcgcatgttaagtgacacagtgttactgttttcgtacaaaact 30704471  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaa 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||  ||||| |||||||||||||    
T  30704470 catcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgactttttgggtcaaaattctcatctcaaatcattgcaa 30704371  T
Q  201 atcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||||||    
T  30704370 atcgtcaggaagcaagtttct 30704350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 23941518 - 23941731
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagt 107  Q
    |||| ||||||||| |||||||||||||| ||||  ||||||||||||||  |   ||||||| |||||||||||||||||| |||||||||||||||||    
T  23941518 aaatatacccttgcacaccttaagtaacgttgcgctacttaactcacgcagtgtgagttaagtcacgcagtgttactgtttttgtacaaaacccatcagt 23941617  T
Q  108 ccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtca 207  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||    
T  23941618 ccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaaccctcatcccaaatcattgcaaatcgtca 23941717  T
Q  208 ggaagcaagtttct 221  Q
    ||||||||||||||    
T  23941718 ggaagcaagtttct 23941731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 12063480 - 12063656
Alignment:
Q  45 cttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttc 144  Q
    ||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||    
T  12063480 cttaactcacgcagcgcaagttaagtgacacagtgttactgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccctcttccttc 12063579  T
Q  145 acaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    | |||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12063580 aaaaacccaaaaagtgtgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttct 12063656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 3368237 - 3368333
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||| |  |||||||||||||| |||||||||||||||||    
T  3368237 ttttctttccctccacctccaaaaacccaaaaagtgcgattatttgggtcaaaatcttcattcataatcattgcaaatcatcaggaagcaagtttct 3368333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 25817616 - 25817713
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttctg 222  Q
    |||||||||||||||||| || |||||||||||||| || ||||||| ||||||||||| | |||||||||||||||||||||  |||||||||||||    
T  25817616 ttttctttccctccacctccaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcgttccaaatcattgcaaatcgtcataaagcaagtttctg 25817713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 48025756 - 48025851
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| ||||||||||  |||||| | ||||||||||| ||||||||||||||||| ||| ||| |||||||||    
T  48025756 ttttctttccctccacctcca-aaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcatcaagaaacaagtttct 48025851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 36185985 - 36185892
Alignment:
Q  19 tgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaa 112  Q
    |||||||||||||||||||||||| ||||||||||||   ||   ||||||| || ||   |||||||||||||||||||||||||||||||||    
T  36185985 tgcgcaccttaagtaacgctgcgttacttaactcacgttgcgtgagttaagtcacacataattactgttttcgtacaaaacccatcagtccaaa 36185892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 33403005 - 33402909
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||| ||||||||  | |||||| ||||||||||  |||||| | ||||||||||| ||||||||||||||||| || |||| |||||||||    
T  33403005 ttttctttcgctccacctctaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcttccggaaacaagtttct 33402909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 35577385 - 35577289
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||| | ||||||| || |||||| ||||||||||  |||| | | |||||  |||| ||||||||||||||||||| ||||| |||||||||    
T  35577385 ttttcttttcgtccacctccaaaaaccccaaaagtgcgaaatttttggtaaaaatactcattccaaatcattgcaaatcgttaggaaacaagtttct 35577289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 18426440 - 18426408
Alignment:
Q  189 aaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||||||||||||||||||    
T  18426440 aaatcattgcaaatcgtcaggaagcaagtttct 18426408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11356214 - 11356435
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagt-aacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaac 99  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  11356214 ccgttctaaatttacccttgcgcaccttaagttaacgctgcacaacttaactcacgcagcgcatgttaagtgacgcagtgttactgttttcgtgcaaaac 11356313  T
Q  100 ccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgca 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  11356314 ccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaattctcatcccaaatcattgca 11356413  T
Q  200 aatcgtcaggaagcaagtttct 221  Q
    |||| |||||||||||||||||    
T  11356414 aatcatcaggaagcaagtttct 11356435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 44221906 - 44222105
Alignment:
Q  22 gcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaaca 121  Q
    |||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||    
T  44221906 gcaccttaagtaacgctgcgcaacttaactcacacaacgcatattaagtgacgcagtgttactgttttcgtataaaactcatcaatccaaactccaagca 44222005  T
Q  122 ccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44222006 ccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttct 44222105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 23941226 - 23941439
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagt 107  Q
    |||| ||||||||| |||||||||||||| ||||  |||||||||||||| |  | ||||||| |||||||||||||||||||||||||||| |||||||    
T  23941226 aaatatacccttgcacaccttaagtaacgttgcgctacttaactcacgcaccacaagttaagtcacgcagtgttactgttttcgtacaaaactcatcagt 23941325  T
Q  108 ccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtca 207  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||    
T  23941326 ccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaattttttggtcaaaatcctcatcccaaatcattgcaaatcgtca 23941425  T
Q  208 ggaagcaagtttct 221  Q
     |||||||||||||    
T  23941426 tgaagcaagtttct 23941439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 4278521 - 4278688
Alignment:
Q  44 acttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccacctt 143  Q
    |||||||||||||| ||   ||||||| |||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  4278521 acttaactcacgcagcgtgagttaagtcacgcaaagttactgttttcgtacaaaacccatcagtcgatactccaaacaccattttctttccctccacctt 4278620  T
Q  144 cacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaa 211  Q
    || |||||| ||||||| || ||||| | |||||||| |||||||||||||||||| |||||||||||    
T  4278621 caaaaaccccaaaagtgagaattttttggtcaaaatcctcatcccaaatcattgcacatcgtcaggaa 4278688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 13070624 - 13070509
Alignment:
Q  80 ttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaat 179  Q
    ||||| |||| ||| |||||||| ||||||| | ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||| |||||||    
T  13070624 ttactatttttgtataaaacccagcagtccatattccaagcaccattttctttccctccacctccaaaaacccaaaaagtgtgattttttgggtcaaaat 13070525  T
Q  180 cttcatcccaaatcat 195  Q
    |||||| |||||||||    
T  13070524 cttcattccaaatcat 13070509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 2369797 - 2369701
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||||||||||||  | |||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  2369797 ttttctttccctccacctctaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcattccaaatcattgcaaatcgtcatgaagcaagtttct 2369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 4452521 - 4452425
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||||||||| || || ||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  4452521 ttttctttccctccatctccaaaaacccaaaaagtgcgaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaagcaagtttct 4452425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 31730863 - 31731004
Alignment:
Q  81 tactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctc--caccttcacaaacccaaaaagtgcgattttttggatcaaaa 178  Q
    |||| |||| ||||||||| |||  |||| |||||||| ||||||||||||||||||  ||||| || ||||||||| ||||||| || | || |||| |    
T  31730863 tactattttggtacaaaactcatatgtcccaactccaagcaccattttctttccctctccacctccaaaaacccaaagagtgcgaattgtggg-tcaata 31730961  T
Q  179 tcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||  || |||||||||||||||||||||||||||||||    
T  31730962 tcttcatttcatatcattgcaaatcgtcaggaagcaagtttct 31731004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 4452843 - 4452757
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaa 211  Q
    |||||||||||||||||| || ||||| ||||||||| | ||||||| ||||||||||||| |||||| |||||||||| |||||||    
T  4452843 ttttctttccctccacctccaaaaacctaaaaagtgcaaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaa 4452757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 12868579 - 12868710
Alignment:
Q  91 gtacaaaacccatcagtccaaactccaaacaccattttctttccctc--caccttcacaaacccaaaaagtgcga-ttttttggatcaaaatcttcatcc 187  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||| ||  ||||| || |||||||||| |||| | |||||| | |||||||||||||      
T  12868579 gtacaaaacccatcaatcccaactccaa-caccattttctttccttcttcacctccaaaaacccaaaa-gtgcaaatttttttggtcaaaatcttcattt 12868676  T
Q  188 caaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||| |||||||| |||||| ||||||||    
T  12868677 caaatcattacaaatcgtgaggaagtaagtttct 12868710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 50336455 - 50336235
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  50336455 ccgttccaaatttacccttgcgcaccttaagtaacgatgcgcaacttaactcacgcagcgcaggttaagtgacgcagtgttactgttttcgtacaaaacc 50336356  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaa 200  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  50336355 catcagtccaaacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaaccattgcaa 50336256  T
Q  201 atcgtcaggaagcaagtttct 221  Q
    ||||||| |||||||||||||    
T  50336255 atcgtcatgaagcaagtttct 50336235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33990638 - 33990858
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||  || |||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  33990638 ccgttttaaatttacccttgcgcaccttaagtaacgccgcacaatttaactcacgcagcgcatgttaagtgacgcagtgttactgttttcgtacaaaacc 33990737  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaa 200  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  33990738 catcagtccaaactccaagcaccattttctttccttccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaa 33990837  T
Q  201 atcgtcaggaagcaagtttct 221  Q
    ||||||| ||| |||||||||    
T  33990838 atcgtcatgaatcaagtttct 33990858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 43210246 - 43210035
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagt 107  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||||  | | ||||||||||||| | ||||||||||||||||||||||||||||    
T  43210246 aaatttacccttgcgcaccttaagtaacgctgcacaccttaactcacgcagtgcaagttaagtgacgcattattactgttttcgtacaaaacccatcagt 43210147  T
Q  108 ccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtca 207  Q
    ||||||||||| |||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  43210146 ccaaactccaagcaccattttctttccctccaccttcaaaaacc--aaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtca 43210049  T
Q  208 ggaagcaagtttct 221  Q
    ||||||||||||||    
T  43210048 ggaagcaagtttct 43210035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 1938473 - 1938676
Alignment:
Q  18 ttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactcca 117  Q
    |||||||||||||||||||||||  | ||||||||||||| || | ||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  1938473 ttgcgcaccttaagtaacgctgcacaccttaactcacgcagcgcaagttaagtgacgcaatgttactgttttcgcacaaaacccatcagtccaaactcca 1938572  T
Q  118 aacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagt 217  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||    
T  1938573 agcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcagaaagaaagt 1938672  T
Q  218 ttct 221  Q
    ||||    
T  1938673 ttct 1938676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12656391 - 12656618
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||||||||||||||||| || |||||| ||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |    
T  12656391 ccgttctaaatttacccttgtgcgccttaaataatgatgcgtaacttaactcacgcagcgcatgttaagtgacgcagtgttactgttttcgtacaaaatc 12656490  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaa-------aagtgcgattttttggatcaaaatcttcatcccaaatc 193  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||       |||||||||||||||| |||||||| | ||||||||||    
T  12656491 catcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaagtgcgattttttgggtcaaaatccttatcccaaatc 12656590  T
Q  194 attgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||||||||| ||||||||||||    
T  12656591 attgcaaatcgtcagaaagcaagtttct 12656618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 157091 - 156889
Alignment:
Q  19 tgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaa 118  Q
    ||||||||||||||||| ||||   |||||||||||||| ||   ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  157091 tgcgcaccttaagtaactctgcactacttaactcacgcagcgtgagttaagtcacgcagtgttactgttttcgtacaaaatccatcagtccaaactccaa 156992  T
Q  119 acaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtt 218  Q
     |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  156991 gcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtt 156892  T
Q  219 tct 221  Q
    |||    
T  156891 tct 156889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 41418799 - 41419007
Alignment:
Q  13 tacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaa 112  Q
    |||||||| |||||||||||||||| ||| | ||||||||| |||  | | ||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  41418799 tacccttgtgcaccttaagtaacgccgcgcatcttaactcatgcagtgcaagttaagtgacgcaatgttactgtttacatacaaaacccatcagtccaaa 41418898  T
Q  113 ctccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaag 212  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||| |    
T  41418899 ctccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattacaaatcgttaggacg 41418998  T
Q  213 caagtttct 221  Q
    |||||||||    
T  41418999 caagtttct 41419007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 50008997 - 50008840
Alignment:
Q  64 gttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcga 163  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| ||||| |||||||||||    
T  50008997 gttaagtgacgaagtgttactgttttcgtacaaaacccatcagtccaaactcgaagcaccattttctttccctcgaccttcaaaaaccaaaaaagtgcga 50008898  T
Q  164 ttttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50008897 ttttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttct 50008840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 5534339 - 5534180
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||| |||||||||||| |||| ||||||||||| |||| ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  5534339 ccgttccaaatttacccttacgcatcttaagtaacgatgcgcaacttaactcacgcggcgcatgttaagtgacgcagtgttactgttttcgtacaaaacc 5534240  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtg 160  Q
    ||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  5534239 cattagtgcaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtg 5534180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 22182325 - 22182184
Alignment:
Q  80 ttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaat 179  Q
    |||||||||| ||  |||||||| |||| || | | ||| ||||||||||||||||||||||| || ||||||||||||||| ||||||| | |||||||    
T  22182325 ttactgtttttgtttaaaacccagcagttcatatttcaagcaccattttctttccctccacctccaaaaacccaaaaagtgcaattttttaggtcaaaat 22182226  T
Q  180 cttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||| ||||||||||||||||||| | |||||||||||||    
T  22182225 cttcattccaaatcattgcaaatcgttaagaagcaagtttct 22182184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 24972607 - 24972703
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| ||||||||||  |||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  24972607 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttct 24972703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 36499124 - 36499220
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| ||||||||||  |||||| | ||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  36499124 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttct 36499220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 55523943 - 55524039
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| ||||||||||  |||||| | ||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  55523943 ttttctttccctccacctgcaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgtaaatcgtcaggaaacaagtttct 55524039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 12586403 - 12586499
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| |||||||| |  |||||| | ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  12586403 ttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttct 12586499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 23283379 - 23283475
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| |||||||| |  |||||| | ||||||||||| | ||||||||||||||||||||||| |||||||||    
T  23283379 ttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattctaaatcattgcaaatcgtcaggaaacaagtttct 23283475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 45246888 - 45246797
Alignment:
Q  129 ctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttc 220  Q
    |||||||||||||| || |||| | ||||||| ||  |||||| | ||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  45246888 ctttccctccacctccaaaaactctaaaagtgtgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaagaaacaagtttc 45246797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 6599452 - 6599385
Alignment:
Q  154 aaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||| ||||| ||||| | | |||||||||||  ||||||||||||| ||||||||||||| ||||||    
T  6599452 aaaaatgcgaattttttggtaaaaatcttcatttcaaatcattgcaagtcgtcaggaagcaggtttct 6599385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 157121 - 157088
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgctgcg 41  Q
    |||| |||||||||||||||||||||||||||||    
T  157121 aaatatacccttgcgcaccttaagtaacgctgcg 157088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 18486355 - 18486388
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgctgcg 41  Q
    |||| |||||||||||||||||||||||||||||    
T  18486355 aaatatacccttgcgcaccttaagtaacgctgcg 18486388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 50009034 - 50009005
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgc 37  Q
    ||||||||||||||||||||||||||||||    
T  50009034 aaatttacccttgcgcaccttaagtaacgc 50009005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20887930 - 20887710
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  20887930 ccgttcgaaatttacccttgcgcaccttaagtaacgttgtgcaacttaactcacgcaacgcatgttaagtgacacagtgttactgttttcgtacaaaacc 20887831  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaa 200  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||  |||||||| |||||||||||||||||||    
T  20887830 catcagtccaaacaccaagcaccattttctttccctacaccttcaaaaacccaaaaagtgggattttttgagtcaaaatcctcatcccaaatcattgcaa 20887731  T
Q  201 atcgtcaggaagcaagtttct 221  Q
    |||||||||||| ||||||||    
T  20887730 atcgtcaggaagaaagtttct 20887710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 29196088 - 29195870
Alignment:
Q  3 gttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaaccca 102  Q
    |||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||    
T  29196088 gttccaaatttacccttgtgcaccttaaataaagctgcgtaacttaactcacgcatcccatgttaagtgacgcagtgttactgttttcgtacaaaaccca 29195989  T
Q  103 tcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaat 202  Q
    | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||| ||| |||||||||||||||||||||    
T  29195988 ttagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattttttaggtcaatatcctcatcccaaatcattgcaaat 29195889  T
Q  203 cgtcaggaagcaagtttct 221  Q
    |||||| ||||||||||||    
T  29195888 cgtcagaaagcaagtttct 29195870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 32910473 - 32910681
Alignment:
Q  13 tacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaa 112  Q
    ||||| |||||  |||||||||||||||||||||||||||||| | ||    |||||| |||||| |||||||||||||||||||||||||||||||| |    
T  32910473 tacccatgcgctacttaagtaacgctgcgtaacttaactcacgtagcgtgaattaagtcacgcagagttactgttttcgtacaaaacccatcagtccata 32910572  T
Q  113 ctccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaag 212  Q
    || ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||  |||||||||| ||||||||||||||| ||||    
T  32910573 cttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaattctcatcccaaaccattgcaaatcgtcatgaag 32910672  T
Q  213 caagtttct 221  Q
    |||||||||    
T  32910673 caagtttct 32910681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 35050496 - 35050308
Alignment:
Q  19 tgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaa 118  Q
    |||||||||||||||||| |||| | ||||||||||||| || | |||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  35050496 tgcgcaccttaagtaacgttgcgcaccttaactcacgcagcgcaagttaagtgacgcagtgttactgttttcgtacaaaactcatcagtccagactccaa 35050397  T
Q  119 acaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtca 207  Q
     |||||||||||||||||||||||||| |||   ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  35050396 gcaccattttctttccctccaccttcaaaaataaaaaaagtacgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtca 35050308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 15235222 - 15235085
Alignment:
Q  84 tgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctcc--accttcacaaacccaaaaagtgcgatttttt-ggatcaaaatc 180  Q
    |||||| |||||||||| ||||||||| ||||||| ||||||||| ||||||||   |||| || ||||||||||||||| ||||||| || ||||||||    
T  15235222 tgtttttgtacaaaaccaatcagtccatactccaagcaccattttatttccctctcgacctccaaaaacccaaaaagtgcaatttttttgggtcaaaatc 15235123  T
Q  181 ttcatcccaaatcattgcaaatcgtcaggaagcaagtt 218  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  15235122 ttcattccaaatcattgcaaatcgtcagaaagcaagtt 15235085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 38739554 - 38739647
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtt 218  Q
    |||||||||||||||||| || |||||||||||||| || ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||    
T  38739554 ttttctttccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcaggaaacaagtt 38739647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 16109319 - 16109403
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcagga 210  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||    
T  16109319 ttttctttccctccacctccaaaaacccaaaaagtgcgattttttgggtcaaaatcttcattccaaattattg-aaatcgtcagga 16109403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 8736582 - 8736460
Alignment:
Q  93 acaaaacccatcagtccaaactccaaacaccattttctttccctc--caccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaa 190  Q
    |||||||||| ||||   |||||||| |||| |||||||||||||  ||||| || ||||||||||||||| | |||||| ||||||||||||||  |||    
T  8736582 acaaaacccaacagtttcaactccaatcacccttttctttccctctccacctccaaaaacccaaaaagtgcaaatttttgaatcaaaatcttcatttcaa 8736483  T
Q  191 atcattgcaaatcgtcaggaagc 213  Q
    ||||||||||||| |||||||||    
T  8736482 atcattgcaaatcatcaggaagc 8736460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 30491655 - 30491558
Alignment:
Q  125 ttttctttccctccaccttcacaaaccca-aaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || ||||||  ||||||||||  |||||  ||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  30491655 ttttctttccctccacctccaaaaacccccaaaagtgcgaaattttgagtcaaaatcttcattccaaatcattgcaaatcgtcaggagacaagtttct 30491558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 763243 - 763148
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||||||||||||||| ||  |||||| ||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||| ||| |||||    
T  763243 ttttctttccctccaccttcaaaattccaaaa-gtgcgaaattttggataaaaatcttcattccaaatcattgcaaatcgttaggaaacaaatttct 763148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 33144043 - 33143948
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttc 220  Q
    |||||||||||||||||| || || ||| |||| |||||  |||||| | ||||||||||| |||||||||||||||||||||| || ||||||||    
T  33144043 ttttctttccctccacctccaaaacccccaaaaatgcgaaattttgggtgaaaatcttcattccaaatcattgcaaatcgtcagaaaacaagtttc 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 34017538 - 34017442
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||| |||||||| || |||  | |||||||| |  |||||| | |||||||||||  |||||||||||||||||||||||| |||||||||    
T  34017538 ttttctttcactccacctccaaaaattccaaaagtgcaaaattttgggtaaaaatcttcatttcaaatcattgcaaatcgtcaggaaacaagtttct 34017442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 5504930 - 5505025
Alignment:
Q  122 ccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||| ||||||||||||| || |||| | |||||||| |  |||||| | |||||||||||    ||||||||||||||||||| || || ||||||    
T  5504930 ccattttttttccctccacctccaaaaactccaaaagtgcaaaattttgggtaaaaatcttcat----aatcattgcaaatcgtcagaaaacaggtttct 5505025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 30934036 - 30933838
Alignment:
Q  23 caccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacac 122  Q
    |||||||||||||| || | ||||||||||||| | || |||||||||||||||  ||||||||||||||||||||| ||| |||||||||||||| |||    
T  30934036 caccttaagtaacgttgtgcaacttaactcacgtagcgcatgttaagtgacgcaacgttactgttttcgtacaaaactcattagtccaaactccaagcac 30933937  T
Q  123 cattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30933936 cattttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttct 30933838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14443983 - 14443763
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||| |||||||||||||| |||||||||||||| || | | |||||| |||||| || | |||||||||| || | ||| || ||||||||||||||    
T  14443983 ccgttccaaatttacccttgctcaccttaagtaacgttgtgcaccttaacccacgcagcgcaagttaagtgacacaattttattggtttcgtacaaaacc 14443884  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaa 200  Q
    ||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||| |||||||||||||||||||    
T  14443883 catcattccaaactccaagcaccattttctttccctccacctccaaaaacccaaaaagtgcgattttttcggtcaaaatcctcatcccaaatcattgcaa 14443784  T
Q  201 atcgtcaggaagcaagtttct 221  Q
    |||||||||||| ||||||||    
T  14443783 atcgtcaggaagtaagtttct 14443763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 20518305 - 20518092
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagt 107  Q
    |||| ||||| |||||  ||||||||||| | ||  |||||||||||||| ||   ||||||| |||||| |||| |||||||||||||||||||| |||    
T  20518305 aaatatacccctgcgctacttaagtaacgattcgctacttaactcacgcagcgtgagttaagtcacgcagagttaatgttttcgtacaaaacccataagt 20518206  T
Q  108 ccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtca 207  Q
    ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||| ||||| |||||||||    
T  20518205 ccatactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaagcattgtaaatcgtca 20518106  T
Q  208 ggaagcaagtttct 221  Q
     |||||||||||||    
T  20518105 tgaagcaagtttct 20518092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 54335593 - 54335750
Alignment:
Q  64 gttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcga 163  Q
    ||||||| |||||| ||||||||||| ||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  54335593 gttaagtaacgcagagttactgtttttgtacaaaactcatcagtccatacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaa 54335692  T
Q  164 ttttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
     ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54335693 atttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttct 54335750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 53767164 - 53767320
Alignment:
Q  65 ttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgat 164  Q
    |||||| | ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||    
T  53767164 ttaagtaatgcagtgttactattgtcgtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgtaat 53767263  T
Q  165 tttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||    
T  53767264 tttttgggtcaaaattctcatcccaaatcattgcaaatcgtcatgaagcaagtttct 53767320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 11916884 - 11917026
Alignment:
Q  79 gttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaa 178  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  11916884 gttactgttttcgtacaaaacccagcagtccatactccaagcaccattttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaa 11916983  T
Q  179 tcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    || |||||||||||| |||||||||||||||||||||||||||    
T  11916984 tcctcatcccaaatctttgcaaatcgtcaggaagcaagtttct 11917026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 30528452 - 30528593
Alignment:
Q  80 ttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaat 179  Q
    |||||||||| |||||||| |||||| |||| ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  30528452 ttactgtttttgtacaaaatccatcaatccatactccaatcgccattttctttccctccacctccaaaaacccaaaaagtgcgattttttggatcaaaat 30528551  T
Q  180 cttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  30528552 cttcattctaaatcattgcaaatcgtcaggaagcaagtttct 30528593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 34086700 - 34086604
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| ||||||||||  |||||| | ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  34086700 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttct 34086604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 7666828 - 7666732
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgat-tttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||||||||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||  ||||||||    
T  7666828 ttttctttccctccacctccaaaaacccaaaaagtgcgaaatttttgggt-aaaatcttcattccaaatcattgcaaatcatcaggaaataagtttct 7666732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 35995304 - 35995400
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| ||||||| || ||||||| | ||| | || || ||||||||||||||||||||||||| |||||||||    
T  35995304 ttttctttccctccacctccaaaaaccccaaaagtgtgaatttttgggtaaaattttttattccaaatcattgcaaatcgtcaggaaacaagtttct 35995400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 19866950 - 19867047
Alignment:
Q  125 ttttctttccctccaccttcacaaacc-caaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || ||||| | ||||||||||  |||||| | ||||||||||| ||||||||||| |||| |||||||| |||||||||    
T  19866950 ttttctttccctccacctccaaaaacctccaaaagtgcgaaattttgggtgaaaatcttcattccaaatcattgtaaattgtcaggaaacaagtttct 19867047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 35063134 - 35063229
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || ||| || ||||||||||  |||||| | |||||||| |  ||||||||||||||||||||| ||| |||||||||    
T  35063134 ttttctttccctccacctccaaaaatcccaaaagtgcgaaattttgggtaaaaatctttaatccaaatcattgcaaatcgtca-gaaacaagtttct 35063229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 39649803 - 39649748
Alignment:
Q  166 ttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||| | ||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  39649803 ttttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttct 39649748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 41600996 - 41601191
Alignment:
Q  1 ccgttctaaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacc 100  Q
    |||||| ||||||| ||||| ||||||||||||||| |||| |||||||||||| || || ||||||||||||||||||||||||||||||||||||| |    
T  41600996 ccgttccaaatttatccttgtgcaccttaagtaacgatgcgcaacttaactcacacagcgcatgttaagtgacgcagtgttactgttttcgtacaaaatc 41601095  T
Q  101 catcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcatt 196  Q
    ||||  |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  41601096 catcgatccaaacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcatt 41601191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 22661800 - 22661935
Alignment:
Q  26 cttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccat 125  Q
    ||||||||||| ||||  |||||||||||||| ||   ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  22661800 cttaagtaacgttgcgctacttaactcacgcagcgtgagttaagtcacgcagagttactgttttcgtacaaaacccatcagtccatactccaagcaccat 22661899  T
Q  126 tttctttccctccaccttcacaaacccaaaaagtgc 161  Q
    |||||||||||||||||||| |||| ||||||||||    
T  22661900 tttctttccctccaccttcaaaaacgcaaaaagtgc 22661935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 14189735 - 14189875
Alignment:
Q  81 tactgttttcgtacaaaacccatcagtccaaact-ccaaacaccattttctttccctcc--accttcacaaacccaaaaagtgcgattttttggatcaaa 177  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||  |||| || || | ||||||||| |||||||||| |||||    
T  14189735 tactgttttggtacataacccatcagtcccaacttccaaacaccattttctttccctccctacctccaaaatctcaaaaagtgtgattttttgggtcaaa 14189834  T
Q  178 atcttcatcccaaatcattgcaaatcgtcaggaagcaagtt 218  Q
    ||||||||  |||||||||||||||||| |||||| |||||    
T  14189835 atcttcatttcaaatcattgcaaatcgttaggaagaaagtt 14189875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 24626217 - 24626076
Alignment:
Q  80 ttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaat 179  Q
    ||||||||||  |||||||| ||| |||||| ||| || | |||||||||||||||| ||||| || |||| |||||||||| ||||||||| | |||||    
T  24626217 ttactgtttttatacaaaactcattagtccatacttcataaaccattttctttccctgcacctccaaaaacacaaaaagtgcaattttttgggtaaaaat 24626118  T
Q  180 cttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||| ||||||||||||||||| ||| |||||||||||||    
T  24626117 cttcattccaaatcattgcaaatcatcatgaagcaagtttct 24626076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 13868363 - 13868221
Alignment:
Q  81 tactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttcc--ctccaccttcacaaacccaaaaagtgcgattttttggatcaaaa 178  Q
    |||| |||| ||||||||||||||||||||||||| || |||||||||||||||  |||||||| || |||| |||||||||| | ||||||| |||||     
T  13868363 tactattttggtacaaaacccatcagtccaaactctaagcaccattttctttccctctccacctccaaaaactcaaaaagtgcaaatttttgggtcaaat 13868264  T
Q  179 tcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||  ||||||||||||||||||  ||||| ||||||||    
T  13868263 tcttcatttcaaatcattgcaaatcgtggggaagtaagtttct 13868221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 20534500 - 20534367
Alignment:
Q  46 ttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttca 145  Q
    ||||||||||||||    ||||||| | |||| ||||||||||| ||||||| ||||||| |||| ||| ||| ||||||||||||||||||||||||||    
T  20534500 ttaactcacgcaacatgagttaagtcaagcagagttactgtttttgtacaaaccccatcattccatacttcaagcaccattttctttccctccaccttca 20534401  T
Q  146 caaacccaaaaagtgcgattttttggatcaaaat 179  Q
     |||||||||||||||||  |||||| |||||||    
T  20534400 aaaacccaaaaagtgcgaaattttgggtcaaaat 20534367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 32074982 - 32075121
Alignment:
Q  80 ttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaat 179  Q
    |||||||||  |||||||| | |||| |||| ||||||| |||||||||| ||||| |||||||   | || ||||||||| || ||||||| |||||||    
T  32074982 ttactgtttatgtacaaaatc-atcaatccatactccaagcaccattttcattccc-ccaccttttaagactcaaaaagtgtgaatttttgggtcaaaat 32075079  T
Q  180 cttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    | |||||||||||||||| ||||| |||||||||||||||||    
T  32075080 cctcatcccaaatcattgtaaatcatcaggaagcaagtttct 32075121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 2807340 - 2807203
Alignment:
Q  81 tactgttttcgtacaaaacccatcagtccaaactccaaacacca-ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaat 179  Q
    ||||||||| |||||||||||  ||||||| | ||    ||||| ||||||||||||||||| ||  ||||||||||||| | ||||||||| |||||||    
T  2807340 tactgtttttgtacaaaacccggcagtccatattcaccgcaccatttttctttccctccacc-tctaaaacccaaaaagtacaattttttgggtcaaaat 2807242  T
Q  180 cttcatcccaaatcattgcaaatcgtcaggaagcaagtt 218  Q
    ||||||   ||||||||||||||||| ||||||||||||    
T  2807241 cttcatttgaaatcattgcaaatcgttaggaagcaagtt 2807203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 27188363 - 27188222
Alignment:
Q  81 tactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctc--caccttcacaaacccaaaaagtgcgattttttggatcaaaa 178  Q
    ||||| ||| ||||||||||||||| ||| ||||||||  |||| ||||||||||||  || || || ||| | ||||| ||| ||||||||| | ||||    
T  27188363 tactgatttggtacaaaacccatcaatcccaactccaacaaccactttctttccctcttcaactccaaaaagctaaaaaatgcaattttttgggttaaaa 27188264  T
Q  179 tcttcatcccaaatcattgcaaatcgtcaggaagcaagtttc 220  Q
    |||||||  ||||||||||| |||||||||||||||| ||||    
T  27188263 tcttcatttcaaatcattgctaatcgtcaggaagcaaatttc 27188222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 34276417 - 34276505
Alignment:
Q  133 ccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||| || |||||| ||||| | ||  |||||| | ||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  34276417 ccctccacctccaaaaaccccaaaagagagaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcatgaaacaagtttct 34276505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 9829600 - 9829387
Alignment:
Q  8 aaatttacccttgcgcaccttaagtaacgctgcgtaacttaactcacgcaacgaatgttaagtgacgcagtgttactgttttcgtacaaaacccatcagt 107  Q
    |||| ||||| | |||||||||||||||| ||||   ||||||||||||| |    ||||||| | |||| |||||||||||||||||||||||||||||    
T  9829600 aaatatacccctacgcaccttaagtaacgttgcgcgccttaactcacgcagcatgagttaagtcatgcagagttactgttttcgtacaaaacccatcagt 9829501  T
Q  108 ccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtca 207  Q
    ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  9829500 ccaaactccaagcaccattttctttccctccaccttcaaaaactcaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtca 9829401  T
Q  208 ggaagcaagtttct 221  Q
    ||||||||||||||    
T  9829400 ggaagcaagtttct 9829387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 20927704 - 20927548
Alignment:
Q  65 ttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgat 164  Q
    |||||| || ||| ||||||||||| ||||||| |||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| |     
T  20927704 ttaagtcacacagagttactgtttttgtacaaagcccaccagtccatactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaa 20927605  T
Q  165 tttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
     |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20927604 attttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttct 20927548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 22787914 - 22787818
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || ||||||| ||||||||| ||||||| ||||||||||||| | ||||||||||||||||||| |||| ||||||||    
T  22787914 ttttctttccctccacctccaaaaacccataaagtgcgaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcatgaagtaagtttct 22787818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 35000444 - 35000536
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagt 217  Q
    |||||||||| |||||||  | |||||||||||||||||  |||||| ||||||||||| | |||||||||||||||||| ||||||||||||    
T  35000444 ttttctttccttccacctctaaaaacccaaaaagtgcgaacttttgggtcaaaatcttcgttccaaatcattgcaaatcgccaggaagcaagt 35000536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 8277322 - 8277226
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||  |||| ||| |  |||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8277322 ttttctttccctccacctccaaaaacctcaaaaatgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttct 8277226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 11573851 - 11573954
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattt-------tttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagt 217  Q
    |||||||||||||||||| || |||||| ||||||||||| |       ||||| | ||||||||||| ||||||||||||||||||||||||| |||||    
T  11573851 ttttctttccctccacctccaaaaaccccaaaagtgcgatgtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagt 11573950  T
Q  218 ttct 221  Q
    ||||    
T  11573951 ttct 11573954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 31133335 - 31133408
Alignment:
Q  132 tccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgt 205  Q
    ||||||||||| || |||||||||||||| || ||||||| ||||||||||||| |||||| ||||||||||||    
T  31133335 tccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattccaaattattgcaaatcgt 31133408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 20500419 - 20500526
Alignment:
Q  80 ttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctc--caccttcacaaacccaaaaagtgcgattttttggatcaaa 177  Q
    |||||||||| ||| |||||| |||| |||| ||| ||| | ||||||||||||||||  ||| | || ||  ||||||||||||||||||||| |||||    
T  20500419 ttactgtttttgtataaaacctatcattccatactgcaagctccattttctttccctcttcacttccaaaattccaaaaagtgcgattttttgggtcaaa 20500518  T
Q  178 atcttcat 185  Q
    ||||||||    
T  20500519 atcttcat 20500526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 19987720 - 19987820
Alignment:
Q  123 cattttctttccctc--caccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttc 220  Q
    |||||||||||||||  |||||||| |||| ||||||||| ||   |||||| ||||||||| | |  ||||||| |||||| |||||||||||||||||    
T  19987720 cattttctttccctcttcaccttcaaaaactcaaaaagtgggaaaatttggagcaaaatcttgagctgaaatcatcgcaaattgtcaggaagcaagtttc 19987819  T
Q  221 t 221  Q
    |    
T  19987820 t 19987820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 2001 - 2157
Alignment:
Q  65 ttaagtgacgcagtgttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgat 164  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  2001 ttaagtcacgcagagttactgttttcgtgcaaaacccatcagtccatactccaaacaccattttctttccctccacctttaaaaacccaaaaagtgcgat 2100  T
Q  165 tttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||||||| | |||||  |||||  |||||||||||||||||||||||||||||||||    
T  2101 tttttgggtaaaaatgctcatcttaaatcattgcaaatcgtcaggaagcaagtttct 2157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 8635 - 8777
Alignment:
Q  79 gttactgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaa 178  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  8635 gttactgttttcgtacaaaacccagcagtccatactccaagcaccattttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaa 8734  T
Q  179 tcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    || |||||||||||| |||||||||||||||||||||||||||    
T  8735 tcctcatcccaaatctttgcaaatcgtcaggaagcaagtttct 8777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 38248 - 38152
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || ||| ||||||||||| | ||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  38248 ttttctttccctccacctccaaaaagccaaaaagtgcaaatttttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttct 38152  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 13543802 - 13543697
Alignment:
Q  115 ccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagca 214  Q
    |||| ||||||||||||||||||||||| || |||||||||| |||| ||||||||| |||||||||| || ||||||||||||||||||  ||||||||    
T  13543802 ccaagcaccattttctttccctccacctccaaaaacccaaaaggtgcaattttttgg-tcaaaatctttattccaaatcattgcaaatcggtaggaagca 13543704  T
Q  215 agtttct 221  Q
    || ||||    
T  13543703 agcttct 13543697  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 31522484 - 31522388
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| ||||||||||  |||||| | |||||||| || ||||||||||||||||||||||||| |||||||||    
T  31522484 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttaattccaaatcattgcaaatcgtcaggaaacaagtttct 31522388  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 32275682 - 32275586
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||| ||||||||| || |||||| ||||||||||  |||||| | ||||||||||| ||||||| ||||||||||||||||| ||| |||||    
T  32275682 ttttcttttcctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatctttgcaaatcgtcaggaaacaaatttct 32275586  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 8518467 - 8518604
Alignment:
Q  86 ttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctc--caccttcacaaacccaaaaagtgcgattttttggatcaaaatcttc 183  Q
    |||| ||||||||||||| ||||| |||| ||| ||||||||| ||||||||  |||||  | ||||||||||||||| | |||||   |||||||| ||    
T  8518467 ttttggtacaaaacccattagtcccaacttcaagcaccattttttttccctcttcacctctaaaaacccaaaaagtgcaaatttttatgtcaaaatcatc 8518566  T
Q  184 atcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    ||  ||||||||||  ||||||  ||||||||||||||    
T  8518567 atttcaaatcattgttaatcgttgggaagcaagtttct 8518604  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 7452495 - 7452411
Alignment:
Q  114 tccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcga-ttttttggatcaaaatcttcatcccaaatcattg 197  Q
    ||||| ||||||||||||||||||||||| || ||||| ||||||| ||| ||||||  || ||||||||||| |||||| ||||    
T  7452495 tccaatcaccattttctttccctccacctccaaaaaccaaaaaagtccgatttttttttattaaaatcttcattccaaattattg 7452411  T

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Target: scaffold1063 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 1643 - 1739
Alignment:
Q  125 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttct 221  Q
    |||||||||||||||||| || |||||| |||||||||| |||||||   |||||||| || ||||||||||||||||||||||||| |||||||||    
T  1643 ttttctttccctccacctccaaaaaccccaaaagtgcgaatttttgggcaaaaatctttattccaaatcattgcaaatcgtcaggaaacaagtttct 1739  T

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