View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_28 (Length: 227)
Name: NF4424_low_28
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 28537104 - 28536900
Alignment:
| Q |
1 |
caaactagctaggcccacatattgacttagtaattctttaacaaagatgccaataaattaacatcaaattaaacaatctacaatcgatggtaacattgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28537104 |
caaactagctaggcccacatattgacttagtaattctttaacaaagatgccaataaattaacatcaaattaaacaatc-------gatggtaacattgcc |
28537012 |
T |
|
| Q |
101 |
atgcaattagagtttacatctacgtacgtaattaattatcaaagaaaaattaattagcataattaatacacttaatttgaaaataactagctagctatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28537011 |
atgcaattagagtttacatctacgtacgtaattaattatcaaagaaaaattaattagca----taatacacttaatttgaaaataactagctagctatca |
28536916 |
T |
|
| Q |
201 |
aactttctcttcctat |
216 |
Q |
| |
|
|||||||||||||||| |
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| T |
28536915 |
aactttctcttcctat |
28536900 |
T |
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