View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4424_low_29 (Length: 224)

Name: NF4424_low_29
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4424_low_29
NF4424_low_29
[»] chr1 (11 HSPs)
chr1 (1-140)||(16315526-16315665)
chr1 (145-224)||(16315393-16315472)
chr1 (190-222)||(9355468-9355500)
chr1 (183-222)||(7015060-7015099)
chr1 (184-222)||(10308361-10308399)
chr1 (184-222)||(46923665-46923703)
chr1 (184-222)||(48569436-48569474)
chr1 (184-224)||(1181567-1181607)
chr1 (190-222)||(12068054-12068086)
chr1 (190-222)||(39222596-39222628)
chr1 (184-224)||(49599862-49599902)
[»] chr5 (5 HSPs)
chr5 (185-220)||(29196097-29196132)
chr5 (183-222)||(35050517-35050556)
chr5 (183-219)||(20887938-20887974)
chr5 (182-222)||(12143807-12143847)
chr5 (180-224)||(41758829-41758873)
[»] chr4 (9 HSPs)
chr4 (184-222)||(12656348-12656386)
chr4 (184-222)||(5534344-5534382)
chr4 (184-222)||(21713326-21713364)
chr4 (184-222)||(31825890-31825928)
chr4 (184-222)||(45865026-45865064)
chr4 (184-222)||(54185682-54185720)
chr4 (184-222)||(54703525-54703563)
chr4 (183-224)||(50333979-50334020)
chr4 (183-219)||(12657273-12657309)
[»] chr7 (2 HSPs)
chr7 (184-224)||(4035311-4035351)
chr7 (184-220)||(39476416-39476452)
[»] chr2 (5 HSPs)
chr2 (183-222)||(42242113-42242152)
chr2 (184-222)||(34620043-34620081)
chr2 (184-222)||(43837507-43837545)
chr2 (184-221)||(5848166-5848203)
chr2 (190-222)||(19380294-19380326)
[»] chr8 (4 HSPs)
chr8 (184-222)||(15743350-15743388)
chr8 (184-218)||(41600953-41600987)
chr8 (183-220)||(5076336-5076373)
chr8 (190-222)||(43693726-43693758)
[»] chr6 (1 HSPs)
chr6 (190-222)||(11598913-11598945)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 16315665 - 16315526
Alignment:
Q  1 tgcacaggttgcagtggtggacatgttgcgaaggatatgttgaaggggtgtctgcccaagaagaactcttccttgacgagaagaattctccttgatcgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  16315665 tgcacaggttgcagtggtggacatgttgcgaaggatatgttgaaggggtgtctgcccaagaagagctcttccttgacgagaagaattctccttgaccgaa 16315566  T
Q  101 tccccctcaaacatgtcctgctcagaacaagaaagtgaag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16315565 tccccctcaaacatgtcctgctcagaacaagaaagtgaag 16315526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 16315472 - 16315393
Alignment:
Q  145 attccttttgctgaagttagagtgatagggtttgtttatgaatcctgctctccaccctgcacattttgctcgcgccctac 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16315472 attccttttgctgaagttagagtgatagggtttgtttatgaatcctgctctccaccctgcacattttgctcgcgccctac 16315393  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 9355500 - 9355468
Alignment:
Q  190 tgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||||||||||||||||||||||||||||||    
T  9355500 tgctctccaccctgcacattttgctcgcgccct 9355468  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 7015099 - 7015060
Alignment:
Q  183 tgaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  7015099 tgaattctgctctccacccagcacattttgctcgcgccct 7015060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 10308361 - 10308399
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  10308361 gaattctgctcttcaccctgcacattttgctcgcgccct 10308399  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 46923665 - 46923703
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  46923665 gaattctgctcttcaccctgcacattttgctcgcgccct 46923703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 48569474 - 48569436
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  48569474 gaattctgctcttcaccctgcacattttgctcgcgccct 48569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 1181607 - 1181567
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccctac 224  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  1181607 gaattctgctctccacccagcacattttgctcgcgtcctac 1181567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 12068086 - 12068054
Alignment:
Q  190 tgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||||||||| ||||||||||||||||||||    
T  12068086 tgctctccacccagcacattttgctcgcgccct 12068054  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 39222596 - 39222628
Alignment:
Q  190 tgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||| ||||||||||||||||||||||||||    
T  39222596 tgctcttcaccctgcacattttgctcgcgccct 39222628  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 49599902 - 49599862
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccctac 224  Q
    |||| ||||||  ||||||||||||||||||||||||||||    
T  49599902 gaattctgctccacaccctgcacattttgctcgcgccctac 49599862  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 29196132 - 29196097
Alignment:
Q  185 aatcctgctctccaccctgcacattttgctcgcgcc 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  29196132 aatcctgctctccaccctgcacattttgctcgcgcc 29196097  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 35050556 - 35050517
Alignment:
Q  183 tgaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  35050556 tgaatcctgctctccaccctgcacattttgttcgcgccct 35050517  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 20887974 - 20887938
Alignment:
Q  183 tgaatcctgctctccaccctgcacattttgctcgcgc 219  Q
    ||||| |||||||||||||||||||||||||||||||    
T  20887974 tgaattctgctctccaccctgcacattttgctcgcgc 20887938  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 12143807 - 12143847
Alignment:
Q  182 atgaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||| ||||||||||||  ||||||||||||||||||||    
T  12143807 atgaattctgctctccacctagcacattttgctcgcgccct 12143847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 41758873 - 41758829
Alignment:
Q  180 ttatgaatcctgctctccaccctgcacattttgctcgcgccctac 224  Q
    ||||||||  |||||| ||||| ||||||||||||||||||||||    
T  41758873 ttatgaatgttgctcttcacccagcacattttgctcgcgccctac 41758829  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 12656348 - 12656386
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  12656348 gaatcctgctctccaccctgcacattttgctcgcaccct 12656386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 5534382 - 5534344
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  5534382 gaatcctgctctccaccctgcacattttactcgcaccct 5534344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 21713364 - 21713326
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  21713364 gaattctgctcttcaccctgcacattttgctcgcgccct 21713326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 31825928 - 31825890
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgccct 31825890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 45865064 - 45865026
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  45865064 gaattctgctatccaccctgcacattttgctcgcgccct 45865026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 54185720 - 54185682
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  54185720 gaattctgctctccaccctgcatattttgctcgcgccct 54185682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 54703525 - 54703563
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  54703525 gaattctgctcttcaccctgcacattttgctcgcgccct 54703563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 50333979 - 50334020
Alignment:
Q  183 tgaatcctgctctccaccctgcacattttgctcgcgccctac 224  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||    
T  50333979 tgaattctgctctccacccggcacattttgctcgcaccctac 50334020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 12657309 - 12657273
Alignment:
Q  183 tgaatcctgctctccaccctgcacattttgctcgcgc 219  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  12657309 tgaattctgctctccacccagcacattttgctcgcgc 12657273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 4035351 - 4035311
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccctac 224  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  4035351 gaattctgctcttcaccctgcacattttgctcgcgccctac 4035311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 39476416 - 39476452
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgcc 220  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  39476416 gaattctgctcttcaccctgcacattttgctcgcgcc 39476452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 42242152 - 42242113
Alignment:
Q  183 tgaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  42242152 tgaatactgctcttcaccctgcacattttgctcgcgccct 42242113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 34620081 - 34620043
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  34620081 gaattctgctcttcaccctgcacattttgctcgcgccct 34620043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 43837507 - 43837545
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  43837507 gaatactgctcttcaccctgcacattttgctcgcgccct 43837545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 5848203 - 5848166
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccc 221  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5848203 gaattctgctatccaccctgcacattttgctcgcgccc 5848166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 19380326 - 19380294
Alignment:
Q  190 tgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||||||||| ||||||||||||||||||||    
T  19380326 tgctctccacccagcacattttgctcgcgccct 19380294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 15743388 - 15743350
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcgccct 222  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  15743388 gaattctgctcttcaccctgcacattttgctcgcgccct 15743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 41600953 - 41600987
Alignment:
Q  184 gaatcctgctctccaccctgcacattttgctcgcg 218  Q
    |||||||||||||||||||||||||||| ||||||    
T  41600953 gaatcctgctctccaccctgcacattttactcgcg 41600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 5076373 - 5076336
Alignment:
Q  183 tgaatcctgctctccaccctgcacattttgctcgcgcc 220  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  5076373 tgaattctgctctccaccctgcacatgttgctcgcgcc 5076336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 43693758 - 43693726
Alignment:
Q  190 tgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||| ||||||||||||||||||||||||||    
T  43693758 tgctcttcaccctgcacattttgctcgcgccct 43693726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 11598913 - 11598945
Alignment:
Q  190 tgctctccaccctgcacattttgctcgcgccct 222  Q
    |||||| ||||||||||||||||||||||||||    
T  11598913 tgctcttcaccctgcacattttgctcgcgccct 11598945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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