View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_3 (Length: 480)
Name: NF4424_low_3
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 39299665 - 39299905
Alignment:
| Q |
18 |
cattcctctgttcatttctttcacatgtggtgttccagaaaccactttggttcggctatcaagtttttctctatcatctgttaaaccttttgattccatt |
117 |
Q |
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| T |
39299665 |
cattcctctgttcatttctttcacatgtggtgttccagaaaccactttggttcggctatcaagtttttctctatcatcggttaaaccttttgattccatt |
39299764 |
T |
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| Q |
118 |
tgaaactttcccacatcacgaaaaccaccaaaatcttcttttccacctactctgtttcctgctacatttgcactatcacgaacatgtgcacgatcaaggt |
217 |
Q |
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| T |
39299765 |
tgaaactttcccacatcacgaacaccaccaaaatcttct---------------tttcctgctacatttgcactatcacgaacatgtgcacgatcaaggt |
39299849 |
T |
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| Q |
218 |
aactttgattctcgttacgatcaggaagagactgaaagtttgaaccaagttcatgg |
273 |
Q |
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| T |
39299850 |
aactttgattctcgttacgatcaggaagagactgaaagtttgaaccaagttcatgg |
39299905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 288 - 465
Target Start/End: Original strand, 39300154 - 39300331
Alignment:
| Q |
288 |
tcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtggtggttccttgtct |
387 |
Q |
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| T |
39300154 |
tcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtggtggttccttgtct |
39300253 |
T |
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| Q |
388 |
accactgtaagttgttcaaaatgagttgtcatctttgggactctgtctttttcaacatgaatatctctctcgtctgtg |
465 |
Q |
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| T |
39300254 |
accactgtaagttgttcaaaatgggtagtcatctttgggactctgtctttttcaacatgaatatctctctcgtttgtg |
39300331 |
T |
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