View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4424_low_30 (Length: 207)
Name: NF4424_low_30
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 4793500 - 4793574
Alignment:
| Q |
77 |
ggctaataagtgaaccgttttttctccc-atacatgaattgttatttacttgattgtgtatgtagcatatttcaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4793500 |
ggctaataagtgaaccgttttttctccccatacatgaattgttatttacttgattgtgtatgtagcatatttcaa |
4793574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 4793617 - 4793662
Alignment:
| Q |
145 |
tttcaacaaaagatgagactgttacatggagatgccacatgagcag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4793617 |
tttcaacaaaagatgagactgttacatggagatgccacatgagcag |
4793662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 8639047 - 8638997
Alignment:
| Q |
19 |
cacaatcctaacattagaataaataaagtttagaattcaaagatatataga |
69 |
Q |
| |
|
|||||||||| |||| |||| | | |||||||||||||||||||||||||| |
|
|
| T |
8639047 |
cacaatcctagcatttgaatgagttaagtttagaattcaaagatatataga |
8638997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University