View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_4 (Length: 435)
Name: NF4424_low_4
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 42 - 282
Target Start/End: Original strand, 16208975 - 16209219
Alignment:
| Q |
42 |
ttcaactcatagctaccttatagttatactactcttccttctctccctctatttt-ctctcttgttttcttgcacttcaatcattatgcaattattatag |
140 |
Q |
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| T |
16208975 |
ttcaactcatagctaccttatagttatactactcttccttctctccctctatttttctctcttgttttcttgcacttcaatcattatgcaattattatag |
16209074 |
T |
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| Q |
141 |
ccnnnnnnn-atcttcttctatatgtcttatagtatagggtgagacatcttgcttcatcctatatagtcctatatgac--ataaaaataatataacaaga |
237 |
Q |
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| T |
16209075 |
ccttttttttatcttcttctatatgtcttatagtatagggtgagacatcttgcttcatcctatatagtcctatatgacatataaatataatataacaaga |
16209174 |
T |
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| Q |
238 |
gaaaaagtgttgcatatggatactaatactagtaatagtagtagt |
282 |
Q |
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| T |
16209175 |
gaaaaagcattgcatatggatactaatagcaatactagtagtagt |
16209219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 16209289 - 16209367
Alignment:
| Q |
349 |
agtagcttagttagtggtggaggaacaggacaaacaactacaagacattggtcagaggaaacactcaaacatgatgatg |
427 |
Q |
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| T |
16209289 |
agtagcttagttagtggtggaggaacaggacaaacaactacaagacattggtcagaggaaacactcaaacatgatgatg |
16209367 |
T |
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