View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4424_low_5 (Length: 417)

Name: NF4424_low_5
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4424_low_5
NF4424_low_5
[»] chr2 (8 HSPs)
chr2 (37-174)||(41642712-41642849)
chr2 (288-411)||(36669070-36669193)
chr2 (272-388)||(31622043-31622159)
chr2 (272-388)||(40894809-40894925)
chr2 (272-348)||(35298563-35298639)
chr2 (272-399)||(4753535-4753662)
chr2 (272-345)||(31620532-31620605)
chr2 (272-388)||(35306047-35306163)
[»] chr8 (6 HSPs)
chr8 (272-397)||(3872215-3872340)
chr8 (272-411)||(3870775-3870914)
chr8 (272-388)||(17863473-17863589)
chr8 (272-411)||(17864630-17864769)
chr8 (273-350)||(37241036-37241113)
chr8 (272-326)||(5005715-5005769)
[»] chr4 (7 HSPs)
chr4 (272-411)||(52190284-52190423)
chr4 (272-388)||(52189193-52189309)
chr4 (272-399)||(30829934-30830061)
chr4 (272-346)||(31410590-31410664)
chr4 (278-347)||(31409326-31409395)
chr4 (274-351)||(8480923-8481000)
chr4 (274-348)||(41774653-41774727)
[»] chr7 (6 HSPs)
chr7 (272-399)||(41739629-41739756)
chr7 (272-411)||(41740941-41741082)
chr7 (272-347)||(45291932-45292007)
chr7 (272-388)||(42537723-42537839)
chr7 (272-347)||(38516627-38516702)
chr7 (272-347)||(45296057-45296132)
[»] chr1 (8 HSPs)
chr1 (272-399)||(26529515-26529642)
chr1 (275-369)||(35062574-35062668)
chr1 (274-388)||(36573971-36574085)
chr1 (272-399)||(35063549-35063676)
chr1 (272-353)||(26531063-26531144)
chr1 (274-351)||(49919676-49919753)
chr1 (272-411)||(36575452-36575591)
chr1 (274-400)||(49917398-49917523)
[»] chr5 (4 HSPs)
chr5 (272-388)||(35967355-35967471)
chr5 (272-399)||(38921462-38921589)
chr5 (272-399)||(16727819-16727946)
chr5 (300-399)||(35968623-35968722)
[»] chr3 (6 HSPs)
chr3 (272-388)||(9099567-9099683)
chr3 (272-350)||(19801793-19801871)
chr3 (272-388)||(20997640-20997756)
chr3 (297-353)||(11137944-11138000)
chr3 (275-399)||(36163393-36163517)
chr3 (272-388)||(37464926-37465042)
[»] chr6 (3 HSPs)
chr6 (272-347)||(9448745-9448820)
chr6 (272-411)||(18191753-18191892)
chr6 (338-411)||(18192920-18192993)
[»] scaffold0115 (4 HSPs)
scaffold0115 (272-351)||(6055-6134)
scaffold0115 (272-351)||(13795-13874)
scaffold0115 (300-351)||(4371-4422)
scaffold0115 (300-351)||(12111-12162)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 41642849 - 41642712
Alignment:
37 taccaaaatgttggactcttgcttgagttcaactttaagacctaaacttgcatccaacaaattttcaattttgccaatctcatcaccctagaatgcagac 136  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
41642849 taccaaaatggtggactcttgcttgagttcaactttaagacctaaacttgcatccaacaaattttcaattttgccaatatcatcaccctagaatgcagac 41642750  T
137 atttaatactttcaacgtcttcacgtggggttagcatc 174  Q
    ||||||||||||||||||||||||||||||||||||||    
41642749 atttaatactttcaacgtcttcacgtggggttagcatc 41642712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 411
Target Start/End: Complemental strand, 36669193 - 36669070
Alignment:
288 tgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaatttcgtccaaaacgtta 387  Q
    ||||||| |||||||||||||||||| |||||| |||||  |||| ||| |||||||||| |||||  ||||||||| ||||| | | ||||||||||||    
36669193 tgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgttagtcaaatgcatccaaaacgtta 36669094  T
388 agttgctgttaattgtgatgatgt 411  Q
    | ||| | ||||  ||||||||||    
36669093 acttgatattaacggtgatgatgt 36669070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 31622159 - 31622043
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    |||| |||||||| |||||||||  |||||| ||||| |||| |||||| |||||  |||| ||| |||||||||| ||||| |||||| ||| |||||     
31622159 cccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtttgtcaaa 31622060  T
372 ttcgtccaaaacgttaa 388  Q
    | | |||||||||||||    
31622059 tgcatccaaaacgttaa 31622043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 40894925 - 40894809
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||| | ||| |||||  |||||||||||||  || |||||| |||||| |||||||| ||||||||||||||||  | ||| ||| |||| |    
40894925 ccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcatt 40894826  T
372 ttcgtccaaaacgttaa 388  Q
      |||||||||||||||    
40894825 cacgtccaaaacgttaa 40894809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 35298563 - 35298639
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccc 348  Q
    |||||||||||||||||||||||  |||||||||||| |||| |||||| |||||  ||||| |  |||||||||||    
35298563 ccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactcccc 35298639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 399
Target Start/End: Original strand, 4753535 - 4753662
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||| ||||||| |||||||||    ||||||||||| |   |||||| |||||||||| ||| ||||||||||| |||||  |||| |||| |||||     
4753535 ccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgttagtcaaa 4753634  T
372 ttcgtccaaaacgttaagttgctgttaa 399  Q
    | | ||||||||||||| ||| ||||||    
4753635 tgcatccaaaacgttaacttggtgttaa 4753662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 31620532 - 31620605
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactc 345  Q
    |||||||||| || |||||||||  |||||||||||||  || ||| || |||||  |||||||||||||||||    
31620532 ccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaaccaaaaactc 31620605  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 35306163 - 35306047
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||| ||| |||||||||  ||||||||||||  ||  |||||| |||||  |||||||  ||||||||||| || |  | ||||||| |||| |    
35306163 ccctcatttaggtccctgaaagtgtacctcgctatcaaacatgtccctgaatcaagaaaacgaaaaaaaaactccccgaaagtctcttctgttagtcatt 35306064  T
372 ttcgtccaaaacgttaa 388  Q
     || |||||||||||||    
35306063 ctcatccaaaacgttaa 35306047  T

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Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 272 - 397
Target Start/End: Complemental strand, 3872340 - 3872215
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||    
3872340 ccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgttagtcaat 3872241  T
372 ttcgtccaaaacgttaagttgctgtt 397  Q
    ||||||||||||||||||||| ||||    
3872240 ttcgtccaaaacgttaagttgttgtt 3872215  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 272 - 411
Target Start/End: Original strand, 3870775 - 3870914
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    |||||| |||||| ||||||| | ||  |||||||||||||| |||||  ||||||||| |||| |||||||||||||||| ||||||| ||| ||||||    
3870775 ccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgttagtcaat 3870874  T
372 ttcgtccaaaacgttaagttgctgttaattgtgatgatgt 411  Q
    ||||||||||||||||||||  ||||||||||||||||||    
3870875 ttcgtccaaaacgttaagttcgtgttaattgtgatgatgt 3870914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 17863473 - 17863589
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||  ||||||||||||| ||||||  ||||| ||  |||||     
17863473 ccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgtcagtcaaa 17863572  T
372 ttcgtccaaaacgttaa 388  Q
    | | |||||||||||||    
17863573 tgcatccaaaacgttaa 17863589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 17864769 - 17864630
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||| | | ||||||| || |||||||||||||||||||| | ||||| |||||||||||| ||||||| |||||  | || |||| |||||     
17864769 ccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgttagtcaaa 17864670  T
372 ttcgtccaaaacgttaagttgctgttaattgtgatgatgt 411  Q
    | | |||||||| |||| ||| ||||||||||| ||||||    
17864669 tgcatccaaaacattaacttggtgttaattgtgttgatgt 17864630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 37241036 - 37241113
Alignment:
273 cctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactccccca 350  Q
    |||| |||||||||||||||||  | ||||||||||| ||| | | || |||||| ||||| ||||||||||||||||    
37241036 cctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactccccca 37241113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 5005715 - 5005769
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaa 326  Q
    ||||||||||||| |||||||||  |||||||||||| |||| |||||| |||||    
5005715 ccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaa 5005769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 52190423 - 52190284
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| ||||||||| || |||||||||||||| |||| || ||||||||||||||||||||||||||||||||  |||| |||| |||||     
52190423 ccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgttagtcaaa 52190324  T
372 ttcgtccaaaacgttaagttgctgttaattgtgatgatgt 411  Q
    | | ||||||||||||| ||| |||||| |||| ||||||    
52190323 tgcatccaaaacgttaacttggtgttaaatgtgctgatgt 52190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 52189193 - 52189309
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||| | |||||  ||||| ||| |||||     
52189193 ccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgttagtcaaa 52189292  T
372 ttcgtccaaaacgttaa 388  Q
    | | |||||||||||||    
52189293 tgcatccaaaacgttaa 52189309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 399
Target Start/End: Original strand, 30829934 - 30830061
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| |||||||||    ||||||||||| |||||||||  |||||| ||||||||||||||||||||||||| |||||  ||| |||||     
30829934 ccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaa 30830033  T
372 ttcgtccaaaacgttaagttgctgttaa 399  Q
    | | ||||||||||||| ||| ||||||    
30830034 tgcatccaaaacgttaacttggtgttaa 30830061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 31410664 - 31410590
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcc 346  Q
    |||| |||| ||||||||||||| |||||||||||||| ||| | |||| |||||||||||||| ||||||||||    
31410664 cccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaactcc 31410590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 31409326 - 31409395
Alignment:
278 tttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactccc 347  Q
    ||||||| ||||||||| ||||||||||||| |||| ||| || ||||| ||||||||||||||||||||    
31409326 tttgggtccctgaaagtgcacctcgctatcaaccacgtccttggatcaaataaacgaaccaaaaactccc 31409395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 8481000 - 8480923
Alignment:
274 ctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaa 351  Q
    |||||||| || |||||||||  | ||||||||||| ||| |||||| |||||| ||||| |||||||||||||||||    
8481000 ctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaa 8480923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 41774653 - 41774727
Alignment:
274 ctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccc 348  Q
    ||||||||||| |||||||||  |||||||||||| |||| |||||| |||||  ||||| |  |||||||||||    
41774653 ctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactcccc 41774727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 272 - 399
Target Start/End: Original strand, 41739629 - 41739756
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||||  |||||| ||||||||||||||||||||||||| |||||  ||| |||||     
41739629 ccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaa 41739728  T
372 ttcgtccaaaacgttaagttgctgttaa 399  Q
    | | ||||||||||||| ||| ||||||    
41739729 tgcatccaaaacgttaacttggtgttaa 41739756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 41741082 - 41740941
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgct--atcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtca 369  Q
    ||||||||||||| ||||||||| ||||| |||  ||||||  | |||| | ||||||||||| |||||||||||||||||||  |||||| ||| ||||    
41741082 ccctcatttgggtccctgaaagttcaccttgctctatcagctgcgtccccggatcaattaaactaaccaaaaactcccccaatatttgttccgttagtca 41740983  T
370 atttcgtccaaaacgttaagttgctgttaattgtgatgatgt 411  Q
        ||||||||||||||| | || ||||| |||||||||||    
41740982 tccacgtccaaaacgttaactggccgttaagtgtgatgatgt 41740941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 45292007 - 45291932
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactccc 347  Q
    ||||||||||||| |||||||||  ||||||||||||| |||||||||| |||||  || ||||||||||||||||    
45292007 ccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactccc 45291932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 42537723 - 42537839
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    |||||| |||||| |||||||||    |||||||||||  ||||||||| |||||| |||||||||||||||||||| ||||  | ||| ||| |||| |    
42537723 ccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttgtcatt 42537822  T
372 ttcgtccaaaacgttaa 388  Q
      |||||||||||||||    
42537823 cacgtccaaaacgttaa 42537839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 38516627 - 38516702
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactccc 347  Q
    ||||||||||||| |||||||||  || |||||||||| |||||||||| |||||  || | ||||||||||||||    
38516627 ccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactccc 38516702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 45296132 - 45296057
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactccc 347  Q
    ||||||||||||| ||| |||||  ||||||||||||| ||||||| || |||||  || ||||||||||||||||    
45296132 ccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactccc 45296057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 399
Target Start/End: Original strand, 26529515 - 26529642
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| |||||||||  ||||||||||||| ||| |||||| |||||  |||||||| |||||||||| ||||| |||||||||| |||||     
26529515 ccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgttagtcaaa 26529614  T
372 ttcgtccaaaacgttaagttgctgttaa 399  Q
    | | ||||||||||||| ||| ||||||    
26529615 tgcatccaaaacgttaacttgatgttaa 26529642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 275 - 369
Target Start/End: Original strand, 35062574 - 35062668
Alignment:
275 tcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtca 369  Q
    |||||||||||||| ||||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||| ||||    
35062574 tcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtca 35062668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 36573971 - 36574085
Alignment:
274 ctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaattt 373  Q
    ||||||| ||| |||||||||  |||||||||||| |||| |||||| |||||  |||||||| |||||||||| |||||  ||||| ||| ||||| |     
36573971 ctcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgttagtcaaatg 36574070  T
374 cgtccaaaacgttaa 388  Q
    | |||||||||||||    
36574071 catccaaaacgttaa 36574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 399
Target Start/End: Complemental strand, 35063676 - 35063549
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    |||||||||||||  ||||||||    ||| ||||||| |||||| ||  |||||| ||||||||||||||||||||||||  |||||  ||| |||||     
35063676 ccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgttagtcaaa 35063577  T
372 ttcgtccaaaacgttaagttgctgttaa 399  Q
    | | ||||||||||||| ||| ||||||    
35063576 tgcatccaaaacgttaacttggtgttaa 35063549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 26531144 - 26531063
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatg 353  Q
    ||||||||| ||| |||||||||  |||||||||| || ||| |||||| |||||  ||||||||||||||||||| |||||    
26531144 ccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaaccaaaaactccctcaatg 26531063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 49919753 - 49919676
Alignment:
274 ctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaa 351  Q
    ||||||||||| | |||||||   | |||||||||| ||| |||||| |||||| ||||| |||||||||||||||||    
49919753 ctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaa 49919676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 36575591 - 36575452
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    |||||||||| || |||||||||  ||||||||||||| ||| ||| |  |||||  |||||||||||||||| || |||||  ||||| ||| ||||      
36575591 ccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgttagtcata 36575492  T
372 ttcgtccaaaacgttaagttgctgttaattgtgatgatgt 411  Q
       ||||||||||||||  | ||||||| ||| |||||||    
36575491 caagtccaaaacgttaaacttctgttaaatgtaatgatgt 36575452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 400
Target Start/End: Original strand, 49917398 - 49917523
Alignment:
274 ctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaattt 373  Q
    |||||||||||  ||||||||| | |||||||| || ||||||| || ||||||| || |||| ||||||||||  | || ||| |||||| ||||| |     
49917398 ctcatttgggtctctgaaagtatagctcgctat-agtcacatccttggatcaatttaatgaactaaaaactcccgtattgtttgatctgttagtcaaatg 49917496  T
374 cgtccaaaacgttaagttgctgttaat 400  Q
    | ||||||| ||||| ||| |||||||    
49917497 catccaaaatgttaacttgatgttaat 49917523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 35967355 - 35967471
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||| | ||||||||| ||| ||| ||||||||||||||  | ||||||||||| |||||||||||||||||||| |||||| ||| |||||     
35967355 ccctcatttggatccctgaaagttcacatcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtcaac 35967454  T
372 ttcgtccaaaacgttaa 388  Q
      |||||||||| ||||    
35967455 cacgtccaaaacattaa 35967471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 399
Target Start/End: Original strand, 38921462 - 38921589
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| |||||||||    ||| ||||||| |||||||||  |||||| ||| ||||||||||||||||||||| |||||  ||| |||||     
38921462 ccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgttagtcaaa 38921561  T
372 ttcgtccaaaacgttaagttgctgttaa 399  Q
    | | ||||||||||||| ||| ||||||    
38921562 tgcatccaaaacgttaacttggtgttaa 38921589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 399
Target Start/End: Original strand, 16727819 - 16727946
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    |||||||||||||  ||||||||  ||||||||||||||||| | |||| |||||  |||||||| ||||||| || |||||  ||||| ||| |||||     
16727819 ccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgttagtcaaa 16727918  T
372 ttcgtccaaaacgttaagttgctgttaa 399  Q
    | | |||||||| |||| ||| ||||||    
16727919 tgcatccaaaacattaacttgatgttaa 16727946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 35968722 - 35968623
Alignment:
300 tcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaatttcgtccaaaacgttaagttgctgttaa 399  Q
    |||||||||| ||||| | |  |||||| ||||||||||||||||||||||||  ||||| |||| ||||| | | ||||||||||||| ||| ||||||    
35968722 tcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttggtgttaa 35968623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 9099567 - 9099683
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| ||| |||||  ||||||||||||  |||||||||| |||||| |||||||||||||||||   ||||| | |||| ||| |||||     
9099567 ccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgttagtcaaa 9099666  T
372 ttcgtccaaaacgttaa 388  Q
    |  ||||||||||||||    
9099667 taagtccaaaacgttaa 9099683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 19801793 - 19801871
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactccccca 350  Q
    ||||||||  ||| |||||||||  |||||||||||||| || ||| |  |||||||||||||||||||||||||||||    
19801793 ccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactccccca 19801871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 20997640 - 20997756
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| ||||||| |  ||||||||||||  |||||||| | |||||| |||| |||||||||||||  ||||| | |||  ||| |||||     
20997640 ccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgttagtcaaa 20997739  T
372 ttcgtccaaaacgttaa 388  Q
    |  ||||||||||||||    
20997740 taagtccaaaacgttaa 20997756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 11137944 - 11138000
Alignment:
297 acctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatg 353  Q
    ||||||||||||| |||||||||| ||||   ||||||||||||||||||| |||||    
11137944 acctcgctatcagacacatccctggatcatgaaaacgaaccaaaaactccctcaatg 11138000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 36163393 - 36163517
Alignment:
275 tcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaatttc 374  Q
    |||||||| | |||||||||   |||||||||||| |  ||||||  ||||||| || ||| |||||||||||||||||   ||| |||| ||||| | |    
36163393 tcatttggatccctgaaagtgtccctcgctatcagaccaatccctcaatcaatttaatgaatcaaaaactcccccaatgtacgttatgttagtcaaatgc 36163492  T
375 gtccaaaacgttaagttgctgttaa 399  Q
     ||||||||||||| ||| ||||||    
36163493 atccaaaacgttaacttggtgttaa 36163517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 37465042 - 37464926
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    |||| |||||||| |||||||||    |||||||||||  ||||||||  |||||| |||| ||||||||||||||  ||||  | ||| ||| |||| |    
37465042 ccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtttgtcatt 37464943  T
372 ttcgtccaaaacgttaa 388  Q
      |||||||||||||||    
37464942 cacgtccaaaacgttaa 37464926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 9448820 - 9448745
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactccc 347  Q
    ||||||||||||| |||||||||  ||||||||||||| |||||||||| |||||  || ||||||||||||||||    
9448820 ccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactccc 9448745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 411
Target Start/End: Original strand, 18191753 - 18191892
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaatggttgttctgttggtcaat 371  Q
    ||||||||||||| |||||||||   || ||||||||| |   |||||  ||||||| || ||| |||||||||||||||||  |||| |||| |||||     
18191753 ccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgttagtcaaa 18191852  T
372 ttcgtccaaaacgttaagttgctgttaattgtgatgatgt 411  Q
    | | ||||||||||||| ||| | ||||| ||| ||||||    
18191853 tgcatccaaaacgttaacttggtattaatggtgctgatgt 18191892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 411
Target Start/End: Complemental strand, 18192993 - 18192920
Alignment:
338 aaaaactcccccaatggttgttctgttggtcaatttcgtccaaaacgttaagttgctgttaattgtgatgatgt 411  Q
    |||||||||| ||||| | |||||||| ||||||||  ||||||||||||| ||| |||||| | |||||||||    
18192993 aaaaactccctcaatgttagttctgttagtcaatttaatccaaaacgttaacttggtgttaagtctgatgatgt 18192920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 6134 - 6055
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaa 351  Q
    |||||||||| || |||||||||  ||||||||||||||| | |||||  || ||| ||||| |||||||||||||||||    
6134 ccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 6055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 13874 - 13795
Alignment:
272 ccctcatttgggttcctgaaagtacacctcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaa 351  Q
    |||||||||| || |||||||||  ||||||||||||||| | |||||  || ||| ||||| |||||||||||||||||    
13874 ccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 13795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 4371 - 4422
Alignment:
300 tcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaa 351  Q
    |||||||||||||| |||||  |||||| ||||| |||||||||||||||||    
4371 tcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 4422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 12111 - 12162
Alignment:
300 tcgctatcagccacatccctgtatcaattaaacgaaccaaaaactcccccaa 351  Q
    |||||||||||||| |||||  |||||| ||||| |||||||||||||||||    
12111 tcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 12162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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