View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4424_low_9 (Length: 354)
Name: NF4424_low_9
Description: NF4424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4424_low_9 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 22 - 332
Target Start/End: Complemental strand, 4951235 - 4950924
Alignment:
| Q |
22 |
atgcacgtgcaatagtaaaacaatgtatcatatgttttgaaagaacatccaaaagggtgtccattgttgaacagagtaactactacagggccaataggac |
121 |
Q |
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| T |
4951235 |
atgcacgtgcaatagtaaaacaatgtatcatatgttttgaaagaacatccaaaagggtgtccattgttgaaaagagtaactactacagggccaatatgac |
4951136 |
T |
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| Q |
122 |
aaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccactataaacattgtggacgag |
221 |
Q |
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| T |
4951135 |
aaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccactaaaaacattgtggacgag |
4951036 |
T |
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| Q |
222 |
gttttttatggtcttctctgcatac-ccccatctttcattcataaaaaacttgataatatcatcaagtggtgcaggtgtcgcttgaaatcacaatatacc |
320 |
Q |
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| T |
4951035 |
gttttttatggtcttctctgcataccccccatctttcattcataaaaaacttgataatatcatcaagtggtgcaggtgtcgcttgaaatcacaatataca |
4950936 |
T |
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| Q |
321 |
aggttttaaata |
332 |
Q |
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||||| |||||| |
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| T |
4950935 |
aggttgtaaata |
4950924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 10484664 - 10484846
Alignment:
| Q |
18 |
agtgatgcacgtgcaatagtaaaacaatgtatcatatgttttgaaagaacatcc--aaaagggtgtccattgttgaacagagtaactactacagggccaa |
115 |
Q |
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| T |
10484664 |
agtgatgcacgtgcaatagtaaaacaatgtatcatat-ttttgaaagaacatcagaaaaagggtgtccattgttgaacatagtaactac---agggtcaa |
10484759 |
T |
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| Q |
116 |
taggacaaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccactataaacatt |
212 |
Q |
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| T |
10484760 |
taggacaaatgatggtggaggttctg------gtgatagtggatacctcaagtagcaaaacatat----aatcaaaagagtatccactaaaaacatt |
10484846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 223756 - 223878
Alignment:
| Q |
148 |
gtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccactataaacattgtggacgaggtttttt-----------atggtctt |
236 |
Q |
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| T |
223756 |
gtgatagtggatacctcaagtagcaaaacata----caatcaaaagtgtatccactaaaaacattgtggacgaggttttttatgaggccatcatggtctt |
223851 |
T |
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| Q |
237 |
ctctgcatacccccatctttcattcat |
263 |
Q |
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| T |
223852 |
ctctgcatacccccatctttcattcat |
223878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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