View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4425-Insertion-3 (Length: 506)
Name: NF4425-Insertion-3
Description: NF4425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4425-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 499
Target Start/End: Complemental strand, 5019787 - 5019307
Alignment:
| Q |
7 |
actagcttgctttaatcgaaacaagtcactgattttattctaaatt-gcaaaggtcaaaagcaactttgcttcattaaaatctttcagaaaaatagtaaa |
105 |
Q |
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| T |
5019787 |
actagcttgctttaatcgaaacaagtcactgattttattctaaatttgcaaaggtcaaaagcaactttgcttcatgaaaatctttcagaaaaatagtaaa |
5019688 |
T |
|
| Q |
106 |
gtaacaataatgactcaatttaatttgtagcatatttggcaacaagatgtacttgctagtggtatgtataaagcaaaaagcaaaagagcttccaaacatg |
205 |
Q |
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| T |
5019687 |
gtaacaataatgactcaatttaatttgtagcatatttggcaacaagatgtacttgctagtggtatgtataaagcaaaaagcaaaagagcttccaaacatg |
5019588 |
T |
|
| Q |
206 |
aatattccactttaatgtaaattcagatatgggtgtactgtaagaaatttacaaacacgagtattgagaatcttatttgtgaatttcatcactgtaaaat |
305 |
Q |
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| T |
5019587 |
aatattccactttaatgtaaattcagatatgggtgtcctgtaagaaatttacaaacacgagtattgagaatcttatttgtgaatttcatcactgtaaaat |
5019488 |
T |
|
| Q |
306 |
tgtcgtggagattgcttgaagaaagaataatcaatggtctcccactttggagattatgaatattttatagttttctataactttattaaactattaagtt |
405 |
Q |
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| T |
5019487 |
tgtcgtggagattgcttgaagaaagaataatcaa-------------cggagattatgaatattttatagttttctataactttattaaactattaagtt |
5019401 |
T |
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| Q |
406 |
ggtctctatgtctaatcacttatcaattagatttctacatcataacaacttacaatcaatacggtttttatatttaacaatttgctatcaattt |
499 |
Q |
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| T |
5019400 |
ggtctctatgtttaatcacttatcaattagatttctacatcataacaacttacaatcaatacggtctttatatttaaaaatttgctatcaattt |
5019307 |
T |
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