View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4425_high_1 (Length: 226)
Name: NF4425_high_1
Description: NF4425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4425_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 55447656 - 55447846
Alignment:
| Q |
36 |
aattaaccatctttgagcatttcaagtgtttaactatgtaatctatagcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagac |
135 |
Q |
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| T |
55447656 |
aattaaccatctttgagcatttcaagtgtttaactatgtaatctatagcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaataggcagagac |
55447755 |
T |
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| Q |
136 |
gtgggatgatgcagttgcttaaagggcagaaatgaaattttgtgacatttaatggatgttaaccgttgggaataagtgattcccatccttt |
226 |
Q |
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| T |
55447756 |
gtggggtgatgcagttacttaaagggtagaaatgaaattttgtgacatttaatggatgttaaccgctgggaataagtgattcccatccttt |
55447846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 41415920 - 41415767
Alignment:
| Q |
72 |
tgtaatctatagcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagacgtgggatg--atgcagttgcttaaagggcagaaatg |
169 |
Q |
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| T |
41415920 |
tgtaatttgtagcaaaacctgtgtaaagacaagaagaaaacgtaacacataagtaggtagaaacgtgggatgccatgcggttac--aaggggtagaaatg |
41415823 |
T |
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| Q |
170 |
aaattttgtgacatttaatggatgttaaccgttgggaataagtgattcccatccttt |
226 |
Q |
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| T |
41415822 |
aacttttgagatatt-aatggatgttaaccgctgggaataagtcattcccatccttt |
41415767 |
T |
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