View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4425_high_2 (Length: 608)
Name: NF4425_high_2
Description: NF4425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4425_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 42 - 582
Target Start/End: Complemental strand, 35256749 - 35256209
Alignment:
| Q |
42 |
ttaaattcatcacccattgtcccttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccagtcttgaattcgccttcatatgt |
141 |
Q |
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| T |
35256749 |
ttaaattcatcacccattgtcctttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccagtcttgaattcgccttcatatgt |
35256650 |
T |
|
| Q |
142 |
agcgcctgaaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttct |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256649 |
agcgcctgaaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttct |
35256550 |
T |
|
| Q |
242 |
ccatgtggaaaattttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256549 |
ccatgtggaaaattttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcat |
35256450 |
T |
|
| Q |
342 |
cgttatcatcatgatggtggctgccttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgc |
441 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256449 |
cgttatcatcatggtggtggctgccttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgc |
35256350 |
T |
|
| Q |
442 |
acttgttcttctcaccgtggcttcccatgccttaaaaacacctccatctttaccaatcattgtgtgtgtttttcttccaatgcttttcagttattttgga |
541 |
Q |
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| T |
35256349 |
acttgttcttctcaccgtggcttcccatgccttaaaaacacctccatctttaccaatcattgtgtgtgtttttcttccaatgcttttcagttattttgga |
35256250 |
T |
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| Q |
542 |
tacccttctccattaacatggataccccaaatgaagatatt |
582 |
Q |
| |
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| T |
35256249 |
tacccttctccattaacatggataccccaaatgaagatatt |
35256209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 19642989 - 19643249
Alignment:
| Q |
44 |
aaattcatcacccattgtcccttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccagtcttgaattcgccttcatatgtag |
143 |
Q |
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|||||||||||||||||||| ||||| || || |||||| || ||||||| |||| |||||||| ||||| ||||||| || |||||||| | | |
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| T |
19642989 |
aaattcatcacccattgtcctttataagtatccccattagtagaagtgtatgcacctattccatccatataaccactcttgaactccccttcataagctg |
19643088 |
T |
|
| Q |
144 |
cgcctgaaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctcc |
243 |
Q |
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|||||||||||| |||| || || |||||| | ||||||||||||||||||| |||||| || || || ||||| ||||||| || || |||| || |
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| T |
19643089 |
gccctgaaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttccc |
19643188 |
T |
|
| Q |
244 |
atgtggaaaattttctgcccattgtcctgtatagtaatcaccattggaaagaaccttctct |
304 |
Q |
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|||||| || || || ||||||| |||| |||||||||| ||||||| |||||| ||||| |
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| T |
19643189 |
atgtgggaagttatcagcccattctcctttatagtaatctccattgggtagaaccctctct |
19643249 |
T |
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